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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAAGAGAGCAGCGATGACTTAGCTAACCCACCCAAGGTAGAGGAGAAGCTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacggccttctcatcactgctttgtgatgctatcgacacttttgtgaacagtatgattttgctgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G399073_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 2
CGGAAGAGAGCAGCGATGACTTAGCTAACCCACCCAAGGTAGAGGAGAAGCTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacggccttctcatcactgct-------------ttgtgatgctatcgacacttttgtgaacagtatgattttgctgcgtgcag
| || || ||||  ||||| |||| | | || || ||||||||||||||| |||||| ||| || |||||||||||||| |||||||||||||  |||||||| |||||  ||||| |||| ||||             || |  || | | || |  | | ||| || ||||       || ||||||
CTGATGACAGCACTGATGAGTTAGTTGATCCGCCGAAGGTAGAGGAGAAGATTGGTGGTGTTCCCCATGGCCTGTCCACGGACTCTGAGGTTGTTCAGAGgtgtgcacgatcttctgatcaatgctgatcgtttccatcttattgtgttgttgatatctgtatgagcaatatgg----aatgtgtgcag

upper sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G40320.4 (Glycine max), 5'ss of exon 2
CGGAAGAGAGCAGCGATGACTTAGCTAACCCACCCAAGGTAGAGGAGAAGCTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacggccttctcatcactgctttgtgatgctatcgacacttttgtgaaca-gtatgattttgctgcgtgcag--------------
  || |       ||| ||  | |   | ||||||||||| ||||| ||| | |||||||| ||||||||||| || ||||| || || || | | ||||||| ||   |  |  |   |  |  | | |  | || | |    |||| |      |||| |   || ||||||  |              
--GAGGGAGATTCCGACGAGCTTGTAGATCCACCCAAGGTGGAGGACAAGATCGGTGCTGTGCCTCATGGCCTTTCAACCGATTCAGATGTCGTCAAGAGGTgtgcgttgtttgatttccctttttctcttgttctcttgttttttttttttgtgtgtataaacgtg-tgcgtgttgttgtgatttgaaag

upper sequence: GRMZM2G399073_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G40320.2 (Glycine max), 5'ss of exon 2
CGGAAGAGAGCAGCGATGACTTAGCTAACCCACCCAAGGTAGAGGAGAAGCTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacggccttctcatcactgctttgtgatgctatcgacacttttgtgaaca-gtatgattttgctgcgtgcag--------------
| || |       ||| ||  | |   | ||||||||||| ||||| ||| | |||||||| ||||||||||| || ||||| || || || | | ||||||| ||   |  |  |   |  |  | | |  | || | |    |||| |      |||| |   || ||||||  |              
CCGAGGGAGATTCCGACGAGCTTGTAGATCCACCCAAGGTGGAGGACAAGATCGGTGCTGTGCCTCATGGCCTTTCAACCGATTCAGATGTCGTCAAGAGgtgtgcgttgtttgatttccctttttctcttgttctcttgttttttttttttgtgtgtataaacgtg-tgcgtgttgttgtgatttgaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148965480|gb|EE016290.2|EE016290
EST:     CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG                         GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: gi|149004856|gb|EE039364.2|EE039364
EST:     CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG                         GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: gi|149073272|gb|EE161562.2|EE161562
EST:     CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG                         GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: gi|166572262|gb|EG188999.1|EG188999
EST:     CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG                         GGAAGCCGAGTCTATCTCTAGGAAGACTCT
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCT
EST: gi|24767582|gb|CA402726.1|CA402726
EST:     CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG                         GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: gi|31360086|gb|CD444443.1|CD444443
EST:     CCACCGACTCTGAGGTTGCCCAGAG                         GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
genomic: CCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: gi|148964727|gb|EC905993.2|EC905993
EST:     CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG                         GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: gi|149112828|gb|EE295636.2|EE295636
EST:     CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG                         GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT