Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGCGGATCCTGATGGTGGGACTCGACGCCGCCGGAAAGACCACCATCCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgccagcatacataagcaccacgttgtgaattaagttatgctcgtggtatcatgattttggacagggctgccaaatagttgttggataattcc...

Basic information

species Zea mays
transcript GRMZM2G395844_T04
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211209102|gb|FL370004.1|FL370004
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCAC-ATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211104793|gb|FL388181.1|FL388181
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211352996|gb|FL379687.1|FL379687
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211143171|gb|FL403027.1|FL403027
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCAC-ATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|21390927|gb|BQ528976.1|BQ528976
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211526786|gb|FL373510.1|FL373510
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211144862|gb|FL419602.1|FL419602
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GWTTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|19350624|gb|BM895156.1|BM895156
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|40333967|gb|CK368037.1|CK368037
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211062491|gb|FL371356.1|FL371356
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|21390617|gb|BQ528666.1|BQ528666
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211137452|gb|FL369540.1|FL369540
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGGTCTGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTG-TCTGG
EST: gi|211298707|gb|FL383934.1|FL383934
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211496361|gb|FL389434.1|FL389434
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGT
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGT
EST: gi|211323867|gb|FL409799.1|FL409799
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211256553|gb|FL390506.1|FL390506
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|32867259|gb|CF006941.1|CF006941
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211067905|gb|FL369033.1|FL369033
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211158129|gb|FL392757.1|FL392757
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211020453|gb|FL418165.1|FL418165
EST:     CCTCTACAAGCTAAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211200095|gb|FL427909.1|FL427909
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211392873|gb|FL400611.1|FL400611
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211360495|gb|FL382217.1|FL382217
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|92087846|gb|EB484077.1|EB484077
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|22818929|gb|BU499019.1|BU499019
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211056840|gb|FL382517.1|FL382517
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211214277|gb|FL374166.1|FL374166
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211158128|gb|FL392756.1|FL392756
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211522090|gb|FL426848.1|FL426848
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211524050|gb|FL387974.1|FL387974
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|28930871|gb|CB334232.1|CB334232
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|5343059|gb|AI795469.1|AI795469
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211132844|gb|FL371940.1|FL371940
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GNTTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|28931320|gb|CB334681.1|CB334681
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211031992|gb|FL381548.1|FL381548
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|213178032|gb|FM194458.1|FM194458
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211500163|gb|FL426481.1|FL426481
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211048948|gb|FL421714.1|FL421714
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCAC-ATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211336362|gb|FL380521.1|FL380521
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211317634|gb|FL415857.1|FL415857
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211408732|gb|FL421610.1|FL421610
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211496097|gb|FL377910.1|FL377910
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|9952117|gb|BE638715.1|BE638715
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|32934510|gb|CF039322.1|CF039322
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|78085349|gb|DV513742.1|DV513742
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211451590|gb|FL371685.1|FL371685
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211039226|gb|FL376277.1|FL376277
EST:     CCTCTACAAGCTAAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCA
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCA
EST: gi|211238376|gb|FL389131.1|FL389131
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211048987|gb|FL423002.1|FL423002
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211057360|gb|FL403427.1|FL403427
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCAC-ATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211434015|gb|FL393499.1|FL393499
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211511387|gb|FL391713.1|FL391713
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCAC-ATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|61118699|gb|DN559660.1|DN559660
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211209609|gb|FL397444.1|FL397444
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCAC-ATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|15208783|gb|BI430667.1|BI430667
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|19058397|gb|BM737064.1|BM737064
EST:     CCTCTACAAGCTGAAGCTAGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
EST: gi|211397814|gb|FL388887.1|FL388887
EST:     CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCG                         GATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG
genomic: CCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 441

GAGATGCGGATCCTGATGGTGGGACTCGACGCCGCCGGAAAGACCACCATCCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGGATGTCGGGGGCCAGGACAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 739

GAGATGCGGATCCTGATGGTGGGACTCGACGCCGCCGGAAAGACCACCATCCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGGATGTCGGGGGCCAGGACAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1018

GAGATGCGGATCCTGATGGTGGGACTCGACGCCGCCGGAAAGACCACCATCCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGGATGTCGGGGGCCAGGACAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 600

GAGATGCGGATCCTGATGGTGGGACTCGACGCCGCCGGAAAGACCACCATCCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgc ... tcaaatacagGATTCAATGTTGAAACTGTGGAGTACAAGAACATCAGCTTCACTGTCTGGGATGTCGGGGGCCAGGACAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGATGCGGATCCTGATGGTGGGACTCGACGCCGCCGGAAAGACCACCATCCTCTACAAGCTGAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGgtaagcgcgccagcatacataagcaccacgttgtgaattaagttatgctcgtggtatcatgattttggacagggctgccaaatagttgttggataattcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC