ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt...

Basic information

species	Zea mays
transcript	GRMZM2G392975_T01
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g44630.3 (Oryza sativa), 5'ss of exon 1

AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttc--cttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||   |||||| ||               |  |  |     |    |     | ||   || |  |  ||  ||    |     |  
AAGTCCTCCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagttcactctcctttggcttcctcccccaccttcaagatctcaagtcttcaactttgtcatgattttgccttggtttgtcttgctagttgatactta--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1

AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtct-gtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgat-gtgatgagctttattaacctactgcgatt
| ||||| ||||||||| || || || ||||| || ||||| || ||| ||||||| || ||||||||||| ||||| |||||||| || |||||||| ||| |  |||    |  |   | |  | | | ||| |  || |  |    |   |        ||  | | ||  |  | ||  ||||| |   |        
AGGTCCAGCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcataaattatatatgctcttcattttgattttgattatattattggtccatttaggatctctaatcatacttagtgttattgattcag-------

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G06680.5 (Glycine max), 5'ss of exon 2

AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
  | | |  || |||||    ||||| || || || || ||||| ||| ||||||| || ||||||||||| ||||| ||||||||||| |||||||| |||| |     | |  ||| ||| || |||  |    |    ||| |               |  | ||      | |   ||| ||    |  ||     
GGGGCTAAGTCTAAGTGTAGTACCGTTGGGATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGgtccgct--ttttttttctttcttttcttaatttctcaaaagctagaaaaaaaaaattaatgtaaagttgaacaacgttgtttgtttgtatg-tgtag--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G42220.3 (Glycine max), 5'ss of exon 1

AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
  | | |  || ||||||   ||||| || || || || ||||| ||| ||||||| || ||||||||||| ||||| ||||||||||| |||||||| |||| ||    | |   || ||| || |||       |    ||| |           |      | || |    | |   ||| ||    |  ||     
GGGGCTAAGTCTAAGTGCAGTACCGTTGGGATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGgtccgt---ttttttctctttcttttcttaacttctcaaaagctagaaaaaa----aaaatataaagttaaacaacgttgtttgttcgtatg-tgtag--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1

AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
| | |   |||||||||  |||| || || || || || || || ||| | || || || ||||||||||| |||||||||||||||||||| ||||| |||      | |  ||||   ||       |||    ||  | |  |  | |  |   ||      ||||||| || |     |  |  |    |||    
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgt------gatggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgaga-attctgtgatgagacggaaagtggtggc--ggtgcag--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S102_107V6.1 (Physcomitrella patens), 5'ss of exon 1

--AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtc-agctctccttccttccttc---cttcttgctgctgctgctggcttcttt-----ttccagccgacatgtgatgtgatgagctttattaacctactgcgatt---------------
  ||   ||   ||   |||      ||||| || || |||||||||||| | ||||| || |||||||| ||||||||||| ||||| || || ||||| |||    | | ||| ||||     | |     ||        | ||||  |  || |      || ||        || |  | |   | | || | | |||    |                  
CGAAACACAGACCCC--TGCTTGGGGGTCGGAATTCAAGGCATCGCCTGGGCGTTCGGTGGAATGATCTTTGCGCTCGTCTATTGCACAGCAGGAATCTCAGgttaaactacctccccttagcagcatgaagttttaaaaaatttctgcaagtatcatgagaagttgcaaaaccagggttacattagctggtatagtgatctaacaaggccgttatgtctctacag

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 1

AAGTCCACCTC--CAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttc---tttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
  ||| | | |  ||  |||      || ||||||||||||||||| ||| | || || || |||||||| || |||||||||||||| || || ||||| |||     || |    ||  ||  |||||    | ||  |     |   |    ||| | |   ||| |  | || |   | |   | ||  ||     |    
--GTCGATCGCACCAGCTGCCTTGGAGTGGGCATCCAGGGCATCGCGTGGGCTTTTGGGGGCATGATCTTTGCTCTCGTCTACTGCACTGCTGGAATCTCAGgtac-caagatgagtttttttgtttcctgtgaggtgtggtgttcgagctaaagtttgttcttgcgaaactttatctcgggtgtggtgttgtcccgaaactt--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ11572 (Selaginella moellendorffii), 5'ss of exon 1

AAGTCCACCTC--CAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctt--tattaaccta-ctgcgatt------------------------------------------------------------------------------------
  ||| | | |  ||  |||      || ||||||||||||||||| ||| | || ||||| |||||||| || |||||||||||||| ||||| ||||| |||             ||      |||   ||      | ||   |     ||    | |  |   |||  |      |  ||  |  |   ||| ||    ||                                                                                    
--GTCGATCGCACCAGCTGCCTTGGAGTGGGCATCCAGGGCATCGCGTGGGCTTTTGGAGGCATGATCTTTGCTCTCGTCTACTGCACTGCCGGAATCTCAGgtaccaagatgagttttttggtgttcgagctaaagtgttcttgcgaaactttacctcgggtgtggtgttgtcccgaaactttggtgctgttctagctaaagtttcgcgagttctagtgttccagcgaaagttttcgtgcgagactggaaaccatagctaaaagcttgacatgttttgtttttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211491998|gb|FL100854.1|FL100854

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACC

EST: gi|148936891|gb|EC881041.2|EC881041

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|21331663|gb|BQ487044.1|BQ487044

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|149079702|gb|EE168703.2|EE168703

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|76923442|gb|DV169489.1|DV169489

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|76285262|gb|DV024830.1|DV024830

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|211492001|gb|FL100857.1|FL100857

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGGCAGAAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|149073721|gb|EE162029.2|EE162029

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|211486225|gb|FL100819.1|FL100819

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACC

EST: gi|9794462|gb|BE552770.1|BE552770

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|148931929|gb|EC875151.2|EC875151

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|149027196|gb|EE046413.2|EE046413

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|148969388|gb|EE020180.2|EE020180

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATC

EST: gi|78086576|gb|DV514969.1|DV514969

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|148942037|gb|EC887032.2|EC887032

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|211489110|gb|FL100837.1|FL100837

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|76012460|gb|DT939630.1|DT939630

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|211492002|gb|FL100858.1|FL100858

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCA                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|71330068|gb|DR801773.1|DR801773

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|211489119|gb|FL100846.1|FL100846

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|71444238|gb|DR825288.1|DR825288

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|5268802|gb|AI770766.1|AI770766

EST:     CTTCGGAGGGATGATCTTCGCGCTCGNCTACTGCACCGNCGGCATCTNCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGNTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|71435834|gb|DR816884.1|DR816884

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|149111018|gb|EE294517.2|EE294517

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|149099303|gb|EE185339.2|EE185339

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|211492005|gb|FL100861.1|FL100861

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|94472445|gb|EB701403.1|EB701403

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|31350056|gb|CD434413.1|CD434413

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|148999413|gb|EE036363.2|EE036363

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|211493182|gb|FL033666.1|FL033666

EST:     GATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: GATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|50335967|gb|CO531093.1|CO531093

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|211491997|gb|FL100853.1|FL100853

EST:     TCGGAGGGATGATCTTTCGCGCTCGTCTACTGCACCGCCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCG
genomic: TCGGAGGGATGATCTT-CGCGCTCGTCTACTGCACCGCC-GGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCG

EST: gi|60341153|gb|DN208126.1|DN208126

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|148936470|gb|EC880575.2|EC880575

EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC

EST: gi|71434061|gb|DR815111.1|DR815111

EST:     TCGGAGGGATGATCTTCGCGCTTCGTCTACTGCACCCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAAG
genomic: TCGGAGGGATGATCTTCGCGCT-CGTCTACTGCACC-GCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAA-G

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 440

AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 480

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 534