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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATGGTGCTGAATTTGAAGAAAATGAAGTCTATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagaaattttgtttttttgcatgtgatgcttcttttttttccatgtatgaccacattttcgttgaatattcatgccaacccaag

Basic information

species Zea mays
transcript GRMZM2G388234_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G388234_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S119_137V6.1 (Physcomitrella patens), 5'ss of exon 5
----------------------------GTTGATGGTGCTGAATTTGAAGAAAATGAAGTCTATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagaaattttgtttt--tttgcatgtgatgcttcttttttttccatgtatgaccacattttcgttgaatattcatgccaacccaag-------------
                            || |||| |||||||||||| ||||| ||||| || ||||| |||||||| || |||||||| || || ||||| | |  || | ||||  | || ||    ||  |       ||   ||||         || ||| |||| |   |    |||  |              
TTTGAGTGCTGGTAATGCGGAGACACGCGTAGATGATGCTGAATTTGAGGAAAACGAAGTTTACGCAATTGATATTGTAACAAGCACTGGTGAAGGAAAGgtgaaattttctattttgttctgtatactctgggtgcaagagtttgttgtacattgctgattacgtagaatgtct-tagtgacctgaatcgaggtttttta

upper sequence: GRMZM2G388234_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S80_199V6.1 (Physcomitrella patens), 5'ss of exon 5
----------------------------GTTGATGGTGCTGAATTTGAAGAAAATGAAGTCTATGCAATCGATATTGTCACCAGCACTGGGGAGGGGAAGgtaagaaattttgtttttttgcatgtgatgcttcttttttttccatgtatgaccac-------attttcgttgaatattcatgccaacccaag---------
                            || |||| |||||| ||||| ||||| ||||| || ||||| ||||| || ||||||||||| || || |||||||     |     || ||    | |||   ||   || | |||| || |   ||       ||||||      | ||    |  |   | |         
TCTGAGCGTGTCCAACCCAGAGACGCGTGTAGATGATGCTGAGTTTGAGGAAAACGAAGTGTACGCAATAGATATCGTGACCAGCACTGGTGATGGAAAGgtaattttctaaacattcttttcagcgata--tcaacttctaccatatacggttactaggagcattttcaactgttgtttgaacagaatgaggttttgcttc