Sequence
atgc intronic sequence ATGC exonic sequenceCTTCATCGTCTGGAACACGCCCGAGTTCGCCCGAGACCTCCTGCCCAAGTACTTCAAGCACAGCAACTTCTCCTCGTTCGTCAGGCAGCTCAACACCTACgtaagtcaccgcatacccgctgacgctacgctcgcgctgctgttcgttatatctggctgcgcacaaatgggatgtcacaaatccggaaggtacgctacta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G384339_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g63750.1 (Oryza sativa), 5'ss of exon 1
CTTCATCGTCTGGAACACGCCCGAGTTCGCCCGAGACCTCCTGCCCAAGTACTTCAAGCACAGCAACTTCTCCTCGTTCGTCAGGCAGCTCAACACCTACgtaagtcaccgcatacccgctgacgctacgctcgcgctgctgttcgttatatctggctgcgcacaaatgggatgtcacaaatccggaaggtacgctacta-----
|||| | || |||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || | ||| | | | || | || | || ||||| ||| | | | || | | | |
CTTCGTTGTGTGGAACACCCCCGAGTTCGCGCGCGACCTCCTCCCCAAGTACTTCAAGCACAGCAACTTCTCCTCCTTCGTCAGGCAGCTCAACACCTACgtacgtccccccccccccccc----ccccattcctctttcttcctactctactcaaa-atacacaaggatccctccactattgctttagctgctttgggaagtta
upper sequence: GRMZM2G384339_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G13400.1 (Glycine max), 5'ss of exon 1
CTTCATCGTCTGGAACACGCCCGAGTTCGCCCGAGACCTCCTGCCCAAGTACTTCAAGCACAGCAACTTCTCCTCGTTCGTCAGGCAGCTCAACACCTACgtaagtcaccgcatacccgctgacgctacgctcgcgctgctgttcgttatatctg-gctgcgca----caaatgggatgtcacaaatccggaaggtacgctacta
||| | || |||||| | |||||||||||| |||| ||| ||||||| |||||||||||| |||||||||| ||||| | || | |||||||||||| | || | | | | | | || || || || || ||| | | ||| || | | | | | || |
TTTCGTGGTTTGGAACCCTCCCGAGTTCGCCAGAGATCTCTTGCCCAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAATTAAACACCTACgtatgccaactcctccttcttactttcatactt----tgtcactcagagaatttgcgctttgtaattttcaatttcattttccgctattaaactgcgcactttt-
upper sequence: GRMZM2G384339_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G33920.1 (Glycine max), 5'ss of exon 1
CTTCATCGTCTGGAACACGCCCGAGTTCGCCCGAGACCTCCTGCCCAAGTACTTCAAGCACAGCAACTTCTCCTCGTTCGTCAGGCAGCTCAACACCTACgtaagtcaccgcatacccgctgacgctacgctcgcgctgctgttcgttatatctggctgcgcacaaatgggatgtcacaaatccggaaggtacgctacta
||||||||| ||| || | |||||||||||| ||||||| ||||||| |||||||| |||| |||||||||| ||||| || ||| | ||||| |||||| || | | | | | || | | || | |||| | |
CTTCATCGTGTGGGACCCACCCGAGTTCGCCAGAGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTACgtatgtttttttcttttctttt-ctttttcttcactccactat--gttaacgatag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149027368|gb|EE046500.2|EE046500EST: ACTTCAAGCACAGCAACTTCTCCTCGTTCGTCAGGCAGCTCAACACCTAC GGGTTTAGAAAGGTTGATCCAGACAGATGGGAATTTGCAAATGAGGGTTTT
genomic: ACTTCAAGCACAGCAACTTCTCCTCGTTCGTCAGGCAGCTCAACACCTACgtaagtcacc ... ttcttaccagGGGTTTAGAAAGGTTGATCCAGACAGATGGGAATTTGCAAATGAGGGTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCATCGTCTGGAACACGCCCGAGTTCGCCCGAGACCTCCTGCCCAAGTACTTCAAGCACAGCAACTTCTCCTCGTTCGTCAGGCAGCTCAACACCTACgtaagtcaccgcatacccgctgacgctacgctcgcgctgctgttcgttatatctggctgcgcacaaatgggatgtcacaaatccggaaggtacgctacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA