1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCGTTTGCTGGTGAACTGCTTGAGAAGGCTGAGGAGCTCATCAGGATGGGCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccctccccccgactcctgtaggcttctgtacaacattgacatgcagtctgatagcaggtcctttgtgctttgtatttggtatgcag
species | Zea mays |
transcript | GRMZM2G381744_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAG ACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGACEST: gi|211014871|gb|FL418131.1|FL418131
genomic: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccc ... tggtatgcagACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGAC
EST: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAG ACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGACEST: gi|22491636|gb|BU051559.1|BU051559
genomic: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccc ... tggtatgcagACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGAC
EST: CTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAG ACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGACEST: gi|149104057|gb|EE289489.2|EE289489
genomic: CTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccc ... tggtatgcagACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGAC
EST: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAG ACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGGAEST: gi|19770569|gb|BQ035290.1|BQ035290
genomic: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccc ... tggtatgcagACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGG-A
EST: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAG ACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGACEST: gi|148938415|gb|EC882734.2|EC882734
genomic: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccc ... tggtatgcagACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGAC
EST: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAG ACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGACEST: gi|149014798|gb|EE044495.2|EE044495
genomic: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccc ... tggtatgcagACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGAC
EST: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAG ACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGACEST: gi|87153402|gb|DY398191.1|DY398191
genomic: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccc ... tggtatgcagACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGAC
EST: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAG ACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGAC
genomic: GCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccc ... tggtatgcagACAATTGAAATTTTAGAGGATCTTGTTGAGAAAGGCTCAGAGAACATGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGTTTGCTGGTGAACTGCTTGAGAAGGCTGAGGAGCTCATCAGGATGGGCTTGCATCCGAGTGAGATCATCATTGGCTACACCAAAGCCATCAACAAGgtgacacccctccccccgactcctgtaggcttctgtacaacattgacatgcagtctgatagcaggtcctttgtgctttgtatttggtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA