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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCCAGTGCGGTCCGAAGGGCAGGTGAGGGAGCTCGTCCCCATCGACCTTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcgtatccctacatttttatgctacagaaagcttggtcccagtgaggtacttgtcacagtgctttgggattactaaattatagtactagctat...

Basic information

species Zea mays
transcript GRMZM2G377609_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G377609_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g43390.1 (Oryza sativa), 5'ss of exon 2
ATCGCCAGTGCGGTCCGAAGGGCAGGTGAGGGAGCTCGTCCCCATCGACCTTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcgtatccctacatttttatgctacagaaagcttggtcccagtgaggtacttgtcacagtgctttgggattactaaattatagt-actagctat------
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GTCTCCCGTGAGGTCCGAGGAGCAGGTGAGGGAGCTCACCCCCATTGACTTCGAGAAGCTCCGGTTCGTCGGTGAGTCGCTCAAGATTCTACGCACTGAGgtaatgc--gcagcc----atttttgtggtatggaaaaccccctttctgttaaa-atttgttgtatgaaactcggtttgggggctcatgatgaattggtacaatgta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76014997|gb|DT942167.1|DT942167
EST:     TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG                         ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: gi|78111205|gb|DV529602.1|DV529602
EST:     TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG                         ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: gi|31360028|gb|CD444385.1|CD444385
EST:     TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG                         ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: gi|71426237|gb|DR807287.1|DR807287
EST:     TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG                         ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: gi|31358130|gb|CD442487.1|CD442487
EST:     TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG                         ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: gi|211446592|gb|FL094688.1|FL094688
EST:     TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG                         ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACATTT
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: gi|211446590|gb|FL094686.1|FL094686
EST:     TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG                         ATTGATGGAAAAGCTGCTTTGCTA
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTA