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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTCCATCCAGGAGGGATGGCATCGATTTGAAGAAAGAGTCTAGCATTCGGAAGTTATATTGCAAGTTTCTACAAGAGTTGGGCATGGCGCTTAAAATgtaagattgggacatttattttcttatcttatatattgttggctgttctttgtgttccactttctacaaattctaataacactatttaaaatgaagtgct...

Basic information

species Zea mays
transcript GRMZM2G377311_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G377311_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g30020.2 (Oryza sativa), 5'ss of exon 2
ACTCTCCATCCAGGAGGGATGGCATCGATTTGAAGAAAGAGTCTAGCATTCGGAAGTTATATTGCAAGTTTCTACAAGAGTTGGGCATGGCGCTTAAAATgtaagattgggacatttatttt-cttatcttatatattgttggctgttctttgtgttccactttctacaaattctaataacactatttaaaatgaagtgct-----
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ATTCTCCATCCAGGAGGGATGGCATTGATTTGAAGAAAGAGTCTTACCTCCGAAAATCATATTGTACTTTTCTACAAGATTTGGGCATGAGGCTTAAAGTgtaagatcatag--ttgatttaacttatatttttcattgttga-tgttaact-tgttcc--tttcaatcattattatgatcttcaattaccatgatgcatgcattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211518784|gb|FL067253.1|FL067253
EST:     CGGAAGTTATATTGCAAGTTTCTACAAGAGTTGGGCATGGCGCTTAAAAT                         GCCCCAAGTGACGATTGCCACAGCAATGGTATTCTGTCATCGTTTTTACCT
genomic: CGGAAGTTATATTGCAAGTTTCTACAAGAGTTGGGCATGGCGCTTAAAATgtaagattgg ... ctgtttttagGCCCCAAGTGACGATTGCCACAGCAATGGTATTCTGTCATCGTTTTTACCT
EST: gi|211518785|gb|FL067254.1|FL067254
EST:     CGGAAGTTATATTGCAAGTTTCTACAAGAGTTGGGCATGGCGCTTAAAAT                         GCCCCAAGTGACG
genomic: CGGAAGTTATATTGCAAGTTTCTACAAGAGTTGGGCATGGCGCTTAAAATgtaagattgg ... ctgtttttagGCCCCAAGTGACG