1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGATCCTCATTGCTGGTACAATGAGCAGGCCGAATACCCGCAACAAGAACAAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattgtcttatttctttggtagaagctgaatgttatacactgaacttattgctcatgtttctctttcttttttgctacaaatttcgtag
species | Zea mays |
transcript | GRMZM2G376074_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTAEST: gi|32935081|gb|CF039893.1|CF039893
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
EST: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTAEST: gi|32935045|gb|CF039857.1|CF039857
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
EST: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTAEST: gi|32934890|gb|CF039702.1|CF039702
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
EST: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTAEST: gi|76288969|gb|DV028537.1|DV028537
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
EST: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCCTCATTGCTGGTACAATGAGCAGGCCGAATACCCGCAACAAGAACAAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattgtcttatttctttggtagaagctgaatgttatacactgaacttattgctcatgtttctctttcttttttgctacaaatttcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT