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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAATTCACATGCAAAACTCTTGCTATTTTAATTTATCACAGGCTGCTGATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgttcttcatacacaacttaacagtattcgatctttcatttgatgaataaatatactgaatgatacttaaattctctttgaacaatatgatggtatacaattacttgagatatctgacatgcgaggtagttgatgctaaagttaccctcctatgcag

Basic information

species Zea mays
transcript GRMZM2G374881_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374881_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g04800.1 (Oryza sativa), 5'ss of exon 3
TTCAAATTCACATGCAAAACTCTTGCTATTTTAATTTATCACAGGCTGCTGATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgttctt---catacacaacttaacagtattcgatctttcattt---gatgaataaa--tatactgaatgat---------acttaaattctctttgaacaatatgatggtata-caattacttgagatatctgacatgcgaggtagttgatgctaaagttaccctcc-tatgcag
                                            ||||| || ||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||    |   | ||  || |  |    | ||| || |||   | | | ||       |||||||||          ||||| ||| || || |  || |   ||   ||  | |||||    |||| ||   ||| || |||   |||||||| || |||||  | |||||
--------------------------------------------GCTGCCGACACACAAGTCATTTCGGAATATGTACGCTATTTTCTCCACCAACACACgtaagtttgttcttgtgtaattataatatatctattaatgctctctccttttaagctaagtaggatggcactgaatgaacaataataaacttagatt-tcattaattaacacagtgaactagtagttactgtgaatatttgctgtgcaagatagcccatgctaaattttccctcgatttgcag

upper sequence: GRMZM2G374881_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g53060.1 (Oryza sativa), 5'ss of exon 3
TTCAAATTCACATGCAAAACTCTTGCTATTTTAATTTATCACAGGCTGCTGATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgttcttcatacacaacttaacagtattcgatctttcatttgatgaataaatatactgaatgatacttaaattctctttgaacaatatgatggtatac-aattacttgagatatctgacatgcgaggtagttgatgctaaagttaccctcc-tatgcag
                                            ||||||||||||||||| ||||| || ||| |||| ||||| |||||||||||||||||||||    | |       ||   || ||                    ||| || |    |||||||       | |||   |     ||||  || | ||| | ||||| || | || |||  ||| ||  |||| |||||||| || |||||| | | |||
--------------------------------------------GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAACACACgtaagttgtccccttg-----aagcgaatag--------------------gaagaagt----tgaatga-------actcttcat-----atatattgttctactagttactggaaacatttgatgtgcaagacagttcatgctaaattttccctccattttcag

upper sequence: GRMZM2G374881_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g53060.2 (Oryza sativa), 5'ss of exon 3
TTCAAATTCACATGCAAAACTCTTGCTATTTTAATTTATCACAGGCTGCTGATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgttcttcatacacaacttaacagtattcgatctttcatttgatgaataaatatactgaatgatacttaaattctctttgaacaatatgatggtatacaattacttgagatatctgacatgcgaggtagttgatgctaaagttaccctcctatgcag
                                            ||||||||||||||||| ||||| || ||| |||| ||||| ||||||||||||||||||||| || |     |  | | |    || | | ||     |  || ||  |||  | |                                                                                                       
--------------------------------------------GCTGCTGATACACAAgtaatttccgattatgtacgctattttctccaccaacacacgtaagtt-gtccccttgaagcgaataggaagaagttgaatgaactcttcatatatat-tgt-------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71320622|gb|DR797046.1|DR797046
EST:     GTCATTTCGGACTATATACGTTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG
genomic: GTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgt ... tcctatgcagAATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG
EST: gi|78543575|gb|DV621073.1|DV621073
EST:     GATACACAAGTCATTTCGGACTATGTACGTTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG
genomic: GATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgt ... tcctatgcagAATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG
EST: gi|37380555|gb|CF627096.1|CF627096
EST:     ATACACAAGTCATTTCGGACTATGTACGTTATTTCCTCCACCAAACACAC                         AATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTA
genomic: ATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACC-AACACACgtaagtttgt ... tcctatgcagAATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTA
EST: gi|37378375|gb|CF625874.1|CF625874
EST:     GATACACAAGTCATTTCGGACTATGTACGTTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG
genomic: GATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgt ... tcctatgcagAATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG
EST: gi|71320624|gb|DR797047.1|DR797047
EST:     GATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG
genomic: GATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgt ... tcctatgcagAATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG
EST: gi|32806791|gb|CD959025.1|CD959025
EST:     GATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACTGTTA
genomic: GATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgt ... tcctatgcagAATCCAGCTTGGACAACCAGCTACTGTTA
EST: gi|78109398|gb|DV527814.1|DV527814
EST:     GATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACAC                         AATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG
genomic: GATACACAAGTCATTTCGGACTATATACGTTATTTCCTCCACCAACACACgtaagtttgt ... tcctatgcagAATCCAGCTTGGACAACCAGCTACTGTTAAAGTTGCAGCTAACTTGATTAG