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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgccaactccatctcctcatcctcatcccgttacctggccgctctgattgccgccatccttgctctattatggaataactgctttgctttccccag

Basic information

species Zea mays
transcript GRMZM2G374779_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374779_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g01150.1 (Oryza sativa), 5'ss of exon 2
GGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgccaactccatctcctca-tcctcatcccgttacctggccgctctgattgccgccatccttgctctatta-tggaataactgctt-tgctttccccag---------------------
|||| || |||||||||| ||||||||| || |||||||||||    ||||||||||| ||||||| |||| | ||||||||||||||||     ||| ||   | ||  || |  |  | ||  | |    ||    ||  |       ||  |  |||| |  | ||| | ||| ||||    || |                     
GGATCGGAGACCAGTGCGCCAACCATGGTGTCGCCAAGTTCACCCGCCTTCTCGCCGACTGGTCCGCCTCCCATGGCTACTGCCTgtactactacactacactacatctctctttctttctttttcagtttccttcccttctcaattagattaattaattaattaattaattacttgtgctactgcctgctaatgatggaaaacgcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211340859|gb|FL372915.1|FL372915
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|211357926|gb|FL387018.1|FL387018
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|211458917|gb|FL402420.1|FL402420
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|211319230|gb|FL384888.1|FL384888
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTG-CT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|101397865|gb|EB820809.1|EB820809
EST:     GAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|211298857|gb|FL392428.1|FL392428
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|211158456|gb|FL415219.1|FL415219
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|211533538|gb|FL409967.1|FL409967
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|211487556|gb|FL382361.1|FL382361
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|211530844|gb|FL420796.1|FL420796
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|32868245|gb|CF007927.1|CF007927
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
EST: gi|211504683|gb|FL413307.1|FL413307
EST:     AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCT                         AGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA
genomic: AAGTTCACTAAACTTCTCGCCGATTGGTCCGGCTCCGACGGCTACTGCCTgtactcgcca ... ctttccccagAGAGATTGGCAGAGGAACATGGGACTCTTGGGTCATGCCTCTTCAACAACA