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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGCATCAAGTGATCAAAGCAAATGATAACCTGACTCCAGAGCATCACCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAGgtttgttaggaacatattaaataattcacctcatcatcaacatcaacagtcacccctatctttctgatatatgtaacctataacactgcag

Basic information

species Zea mays
transcript GRMZM2G374088_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G374088_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g04230.1 (Oryza sativa), 5'ss of exon 2
GACCTGCATCAAGTGATCAAAGCAAATGATAACCTGACTCCAGAGCATCACCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAGgtttgttaggaacatattaaataattcacctcatcatcaacatcaacagtcacccctatctttctgatatatgtaacctataacactgcag--------------------------------------------
|| || |||||||| ||| |||||||| || |||| |  |||||||||||||| |||||| |||| |||||| || |||||||||||||||| |||||||||| || | |||  ||  |  ||||| ||||  ||| ||||| | ||      ||  |||| | |  | | || ||  ||||   |  |                                              
GATCTACATCAAGTTATCGAAGCAAATCATGACCTTAGCCCAGAGCATCACCGTTTTTTCTTGTACCAACTTCTTTGTGCTCTCAAGTACATACATTCAGgttagtgatgaaattagcatctaattaaccttgtcaccaacagccacttcattccaaatctgtatactttgtggaagttatatttcaaccattaatcattactgagtttctgatatatggtttaacttgtctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351123|gb|BM895655.1|BM895655
EST:     CCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAG                         CCCATGTATTTCATCGTGATTTAAAGCCCAGGAACATACT
genomic: CCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAGgtttgttagg ... aacactgcagCCCATGTATTTCATCGTGATTTAAAGCCCAGGAACATACT
EST: gi|148931406|gb|EC874345.2|EC874345
EST:     CCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAG                         CCCATGTATTTCATCGTGATTTAAAGCCCAGGAACATACTGGCCAATTCAG
genomic: CCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAGgtttgttagg ... aacactgcagCCCATGTATTTCATCGTGATTTAAAGCCCAGGAACATACTGGCCAATTCAG
EST: gi|89106234|gb|DY576451.1|DY576451
EST:     CCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAG                         CCCATGTATTTCATCGTGATTTAAAGCCCAGGAACATACTGGCCAATTCAG
genomic: CCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAGgtttgttagg ... aacactgcagCCCATGTATTTCATCGTGATTTAAAGCCCAGGAACATACTGGCCAATTCAG
EST: gi|19436216|gb|BM952626.1|BM952626
EST:     CCGCTTTTTCCTGTATCAACTTATTCGGGCTCTCAAGTACATGCATTCAG                         CCCATGTATTTCATCGGGATTTAAAGCCCAGGAACATACTGGCCAATTCAG
genomic: CCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAGgtttgttagg ... aacactgcagCCCATGTATTTCATCGTGATTTAAAGCCCAGGAACATACTGGCCAATTCAG
EST: gi|22491462|gb|BU051385.1|BU051385
EST:     CCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAG                         CCCATGTATTTCATCGTGATTTAAAGCCCAGGAACATACTGGCCAATTCAG
genomic: CCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAGgtttgttagg ... aacactgcagCCCATGTATTTCATCGTGATTTAAAGCCCAGGAACATACTGGCCAATTCAG