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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCCATCGGGGAGGTTGTGGTCTGCGCGGTTTTGATCCTTCAGGGACAGAACATCGTCAAGGTAACACGGCGCTTCTTGAGTGCGTGGAAACAGAGAGgtaattaacaaggcccttctttgttctttatgaaatcgtccaactttaattggctgatgaatatagctagctgtttgtattgacttggttccctgtatcag

Basic information

species Zea mays
transcript GRMZM2G372877_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G372877_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g40570.1 (Oryza sativa), 5'ss of exon 2
GACTCCATCGGGGAGGTTGTGGTCTGCGCGGTTTTGATCCTTCAGGGACAGAACATCGTCAAGGTAACACGGCGCTTCTTGAGTGCGTGGAAACAGAGAGgtaattaaca--aggcccttctttgttctttat---gaaatcgtccaactttaattggctgatgaatatagcta-gctgtttgtattgacttggttccctgtatcag
|| || || || ||||||||||| || || ||||||||||||||||||||||| ||| ||||  ||| |  ||||||||| | ||| |||||||| | |||||  | |    ||      |  |||||||||    ||||| |   || |   ||   |   | || ||   |  ||  | ||||||   |  |||   |       
GATTCAATTGGAGAGGTTGTGGTTTGTGCTGTTTTGATCCTTCAGGGACAGAATATCTTCAATATAATAAAGCGCTTCTTAAATGCATGGAAACAAAAAGgtaccttatctcagagttaccactgttctttaccccgaaattggtaaattcatatgcaccactaaaaatgattttgcaatatgtattatatatgttgtat-------