Sequence
atgc intronic sequence ATGC exonic sequenceTGCTCATTCAAGGAACAACTCCAGCAGCATGTACGTGTTCATGCAATGGAAGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAGgtagattgttttctttttttaatcttgtgttaattcagaaacgtgcctgaagctttcagatatacatcacttgcttttatcatttcaataattgcagcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G370332_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g08544.2 (Oryza sativa), 5'ss of exon 2
TGCTCATTCAAGGAACAACTCCAGCAGCATGTACGTGTTCATGCAATGGAAGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAGgtagattgttttctttttttaatcttgtgttaattcagaaacgtgcctgaagctttcagatatacatcacttgcttttatcatttcaataattgcagcct-----
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TGCTCATTCAAGGAACAACTTCAGCAGCATGTGCGTGTTCATGCAATGGAAGCAGTGATGGGGTGCTGGGAACTTGAACAGTCTTTACAAAGTCTAACAGgtagaccaaagcttctatctg--cttgaatcagttcagcaa-atggtagaaaatttcaaacatacacttttt--ttttgttatttcattgataatattcaggcaa
upper sequence: GRMZM2G370332_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA17G32980.1 (Glycine max), 5'ss of exon 2
TGCTCATTCAAGGAACAACTCCAGCAGCATGTACGTGTTCATGCAATGGAAGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAGgtagattgt---tttctttttttaatcttgtgttaattcagaaacgtgcctgaagctttcagatatacatcacttgcttttatcatttcaataattgcagcct
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TGTTCCTTCAAAGAACAATTGCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGTTAGAGCAATCATTGCAGAGTCTAACAGgtgcacagaaagtgtcttcttttagtaattgtcgcatcttaaaataaatgggaagatttgttgcgtg-atagaatgaaaaattgaaaatagcatgtttcgc--
upper sequence: GRMZM2G370332_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA06G06890.1 (Glycine max), 5'ss of exon 2
TGCTCATTCAAGGAACAACTCCAGCAGCATGTACGTGTTCATGCAATGGAAGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAGgtagattgttttctttttttaatcttgtgttaattcagaaacgtgcctgaagctttcagatatacatcacttgcttttatcatttc--aataattgcagcct
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TGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGgtacaacgatag-tctttttagtgatttttgcatctcaacataaaaataaactaataaaggttagttgcccttccatgataaaatggaaataacttgattc-
upper sequence: GRMZM2G370332_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G06810.1 (Glycine max), 5'ss of exon 3
TGCTCATTCAAGGAACAACTCCAGCAGCATGTACGTGTTCATGCAATGGAAGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAGgtagattgttttctttttttaatcttgtgttaattcagaaacgtgcctgaagctttcagatatacatcacttgcttttatc-atttcaataattgcagcct-
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TGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATTGAGCAATCCTTACAAAGTTTAACAGgtacagcgatattctttttagtgattgttacatctcaacataaaaat--aaaccaataaaggttggttacatgataaaatggaaatcagtaccagaaaatga
upper sequence: GRMZM2G370332_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G13750.2 (Glycine max), 5'ss of exon 2
TGCTCATTCAAGGAACAACTCCAGCAGCATGTACGTGTTCATGCAATGGAAGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAGgtagattgt--tttctttttttaatcttgtgttaattcagaaacgtgcctgaagctttcagatatacatcacttgcttttatcatttcaataattgcagcct
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TGTTCCTTCAAAGAACAATTGCAGCAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGATATAGAGCAATCATTGCAGAGTCTAACAGgtgcataaaagtgtcttcttttagtaattgtctcatcttaaaataaatgtgaagatttgttgcgtgattgaatgaaaaattgaaaataggatgtttcaca--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71330383|gb|DR801947.1|DR801947EST: AGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAG GGGCATCTCCTGGTGAAGGCACTGGAGCGACCATGTCTGATGATGAAGACA
genomic: AGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAGgtagattgtt ... ggttctgcagGGGCATCTCCTGGTGAAGGCACTGGAGCGACCATGTCTGATGATGAAGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTCATTCAAGGAACAACTCCAGCAGCATGTACGTGTTCATGCAATGGAAGCAGTGATGGGTTGCTGGGAGCTTGAACAATCTTTACAAAGCCTAACAGgtagattgttttctttttttaatcttgtgttaattcagaaacgtgcctgaagctttcagatatacatcacttgcttttatcatttcaataattgcagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT