1 5' 3' | 2 5' 3' | 3 5' 3' |
GGAAGAGATATTGGAAGCTACGCAACCTGCAGAGTTTCAGAAATGCATGGTCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttgccggagtgttgcttccttcatgaaaagcgtactaatttgtgtttggttatttatcaactcttctattgtgtatttttcttcgctcatgta...
species | Zea mays |
transcript | GRMZM2G369912_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTGEST: gi|18660996|gb|BM501157.1|BM501157
genomic: CACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
EST: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTGEST: gi|211511805|gb|FL413831.1|FL413831
genomic: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
EST: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTAEST: gi|211182071|gb|FL377604.1|FL377604
genomic: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTA
EST: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTGEST: gi|148965285|gb|EE016089.2|EE016089
genomic: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
EST: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTGEST: gi|211133221|gb|FL428361.1|FL428361
genomic: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
EST: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTGEST: gi|87157382|gb|DY402171.1|DY402171
genomic: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
EST: CCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTGEST: gi|26457005|gb|CA828588.1|CA828588
genomic: CCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
EST: CCTCTCTTCCGCCAGATCGCACGTTTTCTGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTGEST: gi|22935403|gb|BU571678.1|BU571678
genomic: CCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
EST: TGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTGEST: gi|26560104|gb|CA832339.1|CA832339
genomic: TGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
EST: CCTCTCTTCCGCCAGATCGCACGCTGCCTGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTGEST: gi|213172114|gb|FM190146.1|FM190146
genomic: CCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
EST: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAG GTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
genomic: TCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttg ... tcttgttcagGTTGCTGAGCGGGCGCTATTTTTGTGGAATAACGACCACATCGAGAGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGAGATATTGGAAGCTACGCAACCTGCAGAGTTTCAGAAATGCATGGTCCCTCTCTTCCGCCAGATCGCACGTTGCCTGAATAGCTCACACTTTCAGgtaatggttgccggagtgttgcttccttcatgaaaagcgtactaatttgtgtttggttatttatcaactcttctattgtgtatttttcttcgctcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaaaa