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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCGAGGGGTGGCGCGTCGCCTCCATGGAGGGAGGATGACCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccccactctttgactctctccttccgttcctcgagccctggtgtatggatagcgtttagttgtgtctaatgatttgtaattagaggcaacatc...

Basic information

species Zea mays
transcript GRMZM2G366935_T07
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g40840.1 (Oryza sativa), 5'ss of exon 2
GTAGCGAGGGGTGGCGCGTCGCCTCCATGGAGGGAGGATGACCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccccactctttgactctctccttccgttcctcgagccctggtgtatggatagcgtttagttgtgtctaatgatttgtaattagaggcaacatc
|| |||||||| ||||||||||| || |||||||| || ||||||||||| |||||||| ||||| |||||||||||||||| ||| ||||||||||||| | |  ||    |||||   |  | |    |     | |||| |   |||    |   ||  |  ||      ||| ||     ||   | 
GTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATgtgagcgccaccccgttcctgtctcttggttggctgaaaggagatttgtgtgttcttagatcctgcctgcttggaaactgcagtagttttgttcagtttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211042609|gb|FL405101.1|FL405101
EST:     CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGAT                         ATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
genomic: CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccc ... ggttgtgcagATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
EST: gi|93015243|gb|EB640763.1|EB640763
EST:     CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGAT                         ATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
genomic: CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccc ... ggttgtgcagATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
EST: gi|211045786|gb|FL411675.1|FL411675
EST:     CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGAT                         ATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGYTTTCTGCAATCTGTCG
genomic: CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccc ... ggttgtgcagATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
EST: gi|211070907|gb|FL383766.1|FL383766
EST:     CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGAT                         ATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
genomic: CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccc ... ggttgtgcagATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
EST: gi|148983054|gb|EE028963.2|EE028963
EST:     CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGAT                         ATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
genomic: CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccc ... ggttgtgcagATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
EST: gi|71439614|gb|DR820664.1|DR820664
EST:     CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGAT                         ATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
genomic: CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccc ... ggttgtgcagATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
EST: gi|149000442|gb|EE037616.2|EE037616
EST:     CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGAT                         ATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
genomic: CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccc ... ggttgtgcagATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
EST: gi|211340986|gb|FL379602.1|FL379602
EST:     CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGAT                         ATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG
genomic: CCGCGACGGACACTACGTCTTCGATCTCGGCGAGAACTTGACCCGCCGATgtgagcgccc ... ggttgtgcagATAAAATCTTGAGCAAAATGGGAGAAGGTTCGGGTTTTCTGCAATCTGTCG