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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAAGGTCAGGGGCTCCCCCGTCGTCTACAGGCGATCCTTCCTCGAGAAGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaaaatacatcctccttggtcttcatccatgctcgtgcgtgccttcttatcttacgttgcgccgcctctctgtctactgcatggcttgcag

Basic information

species Zea mays
transcript GRMZM2G363460_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211336640|gb|FL171590.1|FL171590
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211325822|gb|FL171528.1|FL171528
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGG-TTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCT
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCT
EST: gi|78075300|gb|DV503734.1|DV503734
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|33468109|gb|CF245158.1|CF245158
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211325817|gb|FL171523.1|FL171523
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211327985|gb|FL171533.1|FL171533
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211336637|gb|FL171587.1|FL171587
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211334487|gb|FL171584.1|FL171584
EST:     AGAACGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211325818|gb|FL171524.1|FL171524
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|149079095|gb|EE168001.2|EE168001
EST:     AAGGGCCTTTAGCACCGAGGAGATCGACGAGGCCTTCCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTTCTCCGCAGCAGCAGG
genomic: AAGGGCCTT-AGCACCGAGGAGATCGACGAGGCCTTCC-GAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTT-CTCCGCAGCAGCAGG
EST: gi|148941345|gb|EC886254.2|EC886254
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211332322|gb|FL171570.1|FL171570
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211334483|gb|FL171580.1|FL171580
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211332310|gb|FL171558.1|FL171558
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211332312|gb|FL171560.1|FL171560
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|149104153|gb|EE289587.2|EE289587
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211334480|gb|FL171577.1|FL171577
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211330146|gb|FL171546.1|FL171546
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211330150|gb|FL171550.1|FL171550
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|74242480|gb|DT650394.1|DT650394
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211327989|gb|FL171537.1|FL171537
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211327988|gb|FL171536.1|FL171536
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211334484|gb|FL171581.1|FL171581
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211332309|gb|FL171557.1|FL171557
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211332315|gb|FL171563.1|FL171563
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211330151|gb|FL171551.1|FL171551
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|149085990|gb|EE175517.2|EE175517
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211334481|gb|FL171578.1|FL171578
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211334475|gb|FL171572.1|FL171572
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211330155|gb|FL171555.1|FL171555
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211334477|gb|FL171574.1|FL171574
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211325816|gb|FL171522.1|FL171522
EST:     GAAGGGCCTTAGCACCCGAG-AGATCGACGAGGCCTTCCGAAGG-TTCCT                         GATCCTCA-CCCAGCACTANCG-CTACCACTTCTCCGCAGCAGCAGG
genomic: GAAGGGCCTTAGCACC-GAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTA-CGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211336641|gb|FL171591.1|FL171591
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|76912800|gb|DV164886.1|DV164886
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211327981|gb|FL171529.1|FL171529
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211330154|gb|FL171554.1|FL171554
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211332314|gb|FL171562.1|FL171562
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211330144|gb|FL171544.1|FL171544
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGG-TTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211327984|gb|FL171532.1|FL171532
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|71442954|gb|DR824004.1|DR824004
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211325815|gb|FL171521.1|FL171521
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211327986|gb|FL171534.1|FL171534
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211332313|gb|FL171561.1|FL171561
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211334478|gb|FL171575.1|FL171575
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211336636|gb|FL171586.1|FL171586
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|148999595|gb|EE036575.2|EE036575
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|91048105|gb|EB158523.1|EB158523
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|71312718|gb|DR792887.1|DR792887
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211336643|gb|FL171593.1|FL171593
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCANCCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211327991|gb|FL171539.1|FL171539
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|76281032|gb|DV020600.1|DV020600
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCA-CCCAGCACTACGGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGG-CTACCACTTCTCCGCAGCAGCAGG
EST: gi|76913179|gb|DV165031.1|DV165031
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211330148|gb|FL171548.1|FL171548
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211330156|gb|FL171556.1|FL171556
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211327993|gb|FL171541.1|FL171541
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211336642|gb|FL171592.1|FL171592
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGTACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211334474|gb|FL171571.1|FL171571
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211330153|gb|FL171553.1|FL171553
EST:     AGAAGGGCCTTATCACCGAGGAGATCGACTAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAACACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211336639|gb|FL171589.1|FL171589
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
EST: gi|211332317|gb|FL171565.1|FL171565
EST:     AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGGTCCT                         GATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG
genomic: AGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaa ... tggcttgcagGATCCTCAACCCAGCACTACGGCTACCACTTCTCCGCAGCAGCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCCAAGGTCAGGGGCTCCCCCGTCGTCTACAGGCGATCCTTCCTCGAGAAGAAGGGCCTTAGCACCGAGGAGATCGACGAGGCCTTCCGAAGGGTTCCTgtaagatgaaaatacatcctccttggtcttcatccatgctcgtgcgtgccttcttatcttacgttgcgccgcctctctgtctactgcatggcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC