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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCTTGGCTACCATCTTCTTACTTTTGTTTGCCATGGTCTCATATTCTCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatcacctcagtatcataaactgctcaaactataaaacatacaagtttgtccattgctagttagatgggcataggctaatttcatgatgtgaaattctgcccatcaattcag

Basic information

species Zea mays
transcript GRMZM2G359018_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G359018_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g12650.1 (Oryza sativa), 5'ss of exon 2
AATTGCTTGGCTACCATCTTCTTACTTTTGTTTGCCATGGTCTCATATTCTCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaaga---gatcacctcagtatcataaactgctcaaactataa-aacatacaagtttgtccattgctagttagatgggcataggctaatttcatgatgtgaaattctgcccatcaattcag
|||||||||||||||| || || ||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||| |||||  ||||||||||     |  | ||  ||||| ||  || ||||  | |   ||   | ||   ||| |      || |||||    | |    |  |   |      ||| | ||||| |   |||||
AATTGCTTGGCTACCACCTCCTGACTTTCGTTTGCCATGGGCTCATATTCTCTTTGGGTCTTCTCTTTCTCTGGTCTAATGCCTCATCATTTATTAACAAgtaagattgtttttcatctctatcacaacttgttcaagttttggcaaagcataatcatgttccac---aggtagataattacataaaaggtctct------aaactgtgccctttctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15554133|gb|BI644131.1|BI644131
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTG
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTG
EST: gi|31355808|gb|CD440165.1|CD440165
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|20803259|gb|BQ294309.1|BQ294309
EST:     TTTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|29543697|gb|CB604077.1|CB604077
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|29543942|gb|CB604322.1|CB604322
EST:     TGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|22541917|gb|BU092355.1|BU092355
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|60395596|gb|DN228466.1|DN228466
EST:     TCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|94477712|gb|EB706670.1|EB706670
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|32934217|gb|CF039029.1|CF039029
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|22546350|gb|BU098661.1|BU098661
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|22546146|gb|BU098457.1|BU098457
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|22472345|gb|BU036825.1|BU036825
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|22472498|gb|BU036978.1|BU036978
EST:     TCTCTGGGTGGTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGACAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|88757769|gb|DY541910.1|DY541910
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|60395846|gb|DN228716.1|DN228716
EST:     TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
EST: gi|29543376|gb|CB603772.1|CB603772
EST:     TCTCTGGTCTAATGCTTCATCGTTTATCCACAA                         GTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA
genomic: TCTCTGGTCTAATGCTTCATCGTTTATCCACAAgtaagagatc ... atcaattcagGTCTCCCCCAAAGATCCCAGAGGTGGTCATTCCTGAAGATTTAGTTGTCAA