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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATAAAGAAACCAGGTGGACTAGCTACTGAAATAGAGAGTTACTTTGGTTGTTCAGCCTCAAATCTTGTGTTGgtaggaggatagttgtgagctgtgactattcttactataaatgcgttgtggttcattaactttaggttgtcacctccccag

Basic information

species Zea mays
transcript GRMZM2G349603_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G349603_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g58390.1 (Oryza sativa), 5'ss of exon 3
ATATAAAGAAACCAGGTGGACTAGCTACTGAAATAGAGAGTTACTTTGGTTGTTCAGCCTCAAATCTTGTGTTGgtaggag-gatagttgtgagctgtgactattcttactataaatgcgttgtggttcattaactttaggttgtcacctccccag
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ATATAAAGAAGCCTGGTGGAGAAGCTAAGGAAATAGAGAGTTACTTTGGTTGTTCAGCCTCAAATCTTGTTCTGgtaggaatggctataatcacttgcgacaact-ttacttctaatgtattttacacagctaagattattctttcatgtttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101383842|gb|EB813976.1|EB813976
EST:     CTACTGAAATAGAGAGTTACTTTGGTTGTTCAGCCTCAAATCTTGTGTTG                         GTTGGTGACCGTTACTTCACTGATGTGGTCTATGGAAACAAGAATGGCTTT
genomic: CTACTGAAATAGAGAGTTACTTTGGTTGTTCAGCCTCAAATCTTGTGTTGgtaggaggat ... acctccccagGTTGGTGACCGTTACTTCACTGATGTGGTCTATGGAAACAAGAATGGCTTT