Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtctgggttgggggttttgcttgtgctcctacgcggtctggttctgtcctgactgtgctcgattggtccag

Basic information

species Zea mays
transcript GRMZM2G348866_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969459|gb|EE020269.2|EE020269
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|76021487|gb|DT948657.1|DT948657
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|76932642|gb|DV173100.1|DV173100
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|211497316|gb|FL084186.1|FL084186
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAMCCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|76915823|gb|DV166138.1|DV166138
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|71434350|gb|DR815400.1|DR815400
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|50334180|gb|CO529306.1|CO529306
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|86468761|gb|DY235131.1|DY235131
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCACCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|211500195|gb|FL084194.1|FL084194
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|101402261|gb|EB822718.1|EB822718
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|78073578|gb|DV502012.1|DV502012
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|211497318|gb|FL084188.1|FL084188
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|76286853|gb|DV026421.1|DV026421
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|78119406|gb|DV537790.1|DV537790
EST:     AGCCGGAGGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|211497310|gb|FL084180.1|FL084180
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|211497317|gb|FL084187.1|FL084187
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|211497311|gb|FL084181.1|FL084181
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|211500193|gb|FL084192.1|FL084192
EST:     AGCCGGAAKGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|148954829|gb|EC900302.2|EC900302
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|211497313|gb|FL084183.1|FL084183
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|71444517|gb|DR825567.1|DR825567
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|93013298|gb|EB638818.1|EB638818
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|101396950|gb|EB820400.1|EB820400
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|78111855|gb|DV530252.1|DV530252
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|71447775|gb|DR828825.1|DR828825
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|71449627|gb|DR830677.1|DR830677
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
EST: gi|71447776|gb|DR828826.1|DR828826
EST:     AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAG                         GAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG
genomic: AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtct ... attggtccagGAACTCTCAGCCCCGATTCCAGTTCATCGTCATGAACCGGCGCAACACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCGGAAGGACGTCGAGGGGTCGCTGTTTGTCGTCAAGAGgtgagggtctgggttgggggttttgcttgtgctcctacgcggtctggttctgtcctgactgtgctcgattggtccag

- - - - - - - - - - -  GCTGTT