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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctcattccgattccatctctgcatggggcggttgcttgtttcgtcatacattcggcgtgacgggcattggtgtgggcacgagtgttcagtgtt...

Basic information

species Zea mays
transcript GRMZM2G348578_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G348578_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g55380.1 (Oryza sativa), 5'ss of exon 2
GGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctcattccgattccatctctgcatggggcggttgcttgtttcgtcatacattcggcgtg-acgggcattggtgtgggcacgagtgttcagtgtt
 || | |||| ||  ||| ||||||||| |||||||||||||||| |  ||| | || ||||||||||||||| | | ||||||||||||||| |||||||| | | |||  | ||||| |     ||  ||    | |   ||| |      ||  |  | ||   |  | | ||    | |  |  |  |||  | |||
CGACACGCCGATGAGGAGGGAGCGGCTGATGGAGGCGGCGTGGCCCGGAATGGCGTATGGCGAGTCCGGCGAGCCGGAGCCGTCCTTGATCCCTTACCAGgtcacgcctcgcttcgatttctcgattggttgcaatgttgcattgatgttgtttatttctgacggatattgacgttttcttaga-ataatagttttgggtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211221696|gb|FL402199.1|FL402199
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211524527|gb|FL409924.1|FL409924
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211379444|gb|FL390601.1|FL390601
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211059645|gb|FL374517.1|FL374517
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGC
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGC
EST: gi|21760278|gb|BQ635819.1|BQ635819
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTCGTCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|4776430|gb|AI665433.1|AI665433
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211275143|gb|FL390046.1|FL390046
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCCACAATTTGCGACATC
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCC-ACAATTTGCGACATC
EST: gi|32804338|gb|CD956574.1|CD956574
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAACCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211156335|gb|FL380330.1|FL380330
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGG
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGG
EST: gi|211051020|gb|FL385058.1|FL385058
EST:     TGCCTTACGGCGAGTCCGGCSAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATT
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATT
EST: gi|211382331|gb|FL400544.1|FL400544
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211146315|gb|FL420911.1|FL420911
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211194093|gb|FL377676.1|FL377676
EST:     TGCCTTACKGCGAGTCCGGCGAGGCTGCGCCGTCSTTGATCCCATACCAG                         ATTKTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACA
EST: gi|211159864|gb|FL403893.1|FL403893
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAACCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211195068|gb|FL425772.1|FL425772
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACA
EST: gi|211382081|gb|FL390616.1|FL390616
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTTCGTGCTTTGTACTTTCCACAATTTGCGACATC
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCT-CGTGCTTTGTACTTTCCACAATTTGCGACATC
EST: gi|211446193|gb|FL415918.1|FL415918
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211382025|gb|FL388792.1|FL388792
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAAGCTGGCAGCCTCGTGCTTTG
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGA-GCTGGCAGCCTCGTGCTTTG
EST: gi|211158500|gb|FL418680.1|FL418680
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         AATTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211168210|gb|FL421348.1|FL421348
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211054755|gb|FL416973.1|FL416973
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|148950085|gb|EC895620.2|EC895620
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211006246|gb|FL408516.1|FL408516
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|32804738|gb|CD956974.1|CD956974
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAACCTCGCGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211384668|gb|FL388813.1|FL388813
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211076469|gb|FL387319.1|FL387319
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211226255|gb|FL422660.1|FL422660
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|78027558|gb|DV495945.1|DV495945
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|78080612|gb|DV509024.1|DV509024
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211498795|gb|FL369832.1|FL369832
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         AWTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTG
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTG
EST: gi|211059739|gb|FL378978.1|FL378978
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211327568|gb|FL371067.1|FL371067
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211076164|gb|FL369889.1|FL369889
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211207594|gb|FL416149.1|FL416149
EST:     GCCTTACGGCGAGTCCGGCGAGGCTGCGC-GTGCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: GCCTTACGGCGAGTCCGGCGAGGCTGCGCCGT-CCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211204904|gb|FL412274.1|FL412274
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211206598|gb|FL376326.1|FL376326
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211112785|gb|FL373233.1|FL373233
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211313563|gb|FL415358.1|FL415358
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211149284|gb|FL424935.1|FL424935
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211087927|gb|FL409079.1|FL409079
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGC
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGC
EST: gi|26457639|gb|CA829222.1|CA829222
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|148941852|gb|EC886830.2|EC886830
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211153339|gb|FL393645.1|FL393645
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|149009320|gb|EE041386.2|EE041386
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|89247524|gb|DY619310.1|DY619310
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211228049|gb|FL407858.1|FL407858
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211533533|gb|FL409962.1|FL409962
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211434206|gb|FL402851.1|FL402851
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211439349|gb|FL401113.1|FL401113
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATSA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
EST: gi|211384674|gb|FL389258.1|FL389258
EST:     TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAG                         ATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA
genomic: TGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 22

GGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCAGAACAGTGTGAAAATATAGTAAAAACGGCAAAGGAGAGACTTAAGCCAT


Block sizes: 44 (upstream exon), 45 (downstream exon)
Score: 33

GGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCAGAACAGTGTGAAAATATAGTAAAAACGGCAAAGGAGAGACTTAAGCCAT


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 29

GGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCAGAACAGTGTGAAAATATAGTAAAAACGGCAAAGGAGAGACTTAAGCCAT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 248

GGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCTTGATCCCATACCAGgtgatgtctc ... tcttgagcagATTTTGAGCTGGCAGCCTCGTGCTTTGTACTTTCCACAATTTGCGACATCAGAACAGTGTGAAAATATAGTAAAAACGGCAAAGGAGAGACTTAAGCCAT