Sequence
atgc intronic sequence ATGC exonic sequenceTGCTTCAAAAGAGGCTTGGGATGATTACAATAGGTATCTTTCTGACAAGAAAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAGgttttttttttttcaatttctccatctaatttgctttaactttattgaaaatatggccttcttgatctattgtactccctccattcaaaattataagaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G347447_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 5'ss of exon 2
------------------------TGCTTCAAAAGAGGCTTGGGATGATTACAATAGGTATCTTTCTGACAAGAAAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAGgttttttttttttcaatttctccatctaatttgctttaactttattgaaaatatggccttcttgatctattgtactccctccattcaaaattataagaca
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ACTTGCCATCATCTTCATAGTTTCAGCTTCAAAAGAGGCTTGGGATGATTACAATAGGTACCTTTCAGACAAGAAAGCAAACGGAAGGGAAGTTTTGGTGgtaaaggatggcaaccatagacaggtttttgttttctctgttatattttctgtttt-ttaaaaccgtagtgaaactttg----tctaaatctattgtaagtttac-------------------
upper sequence: GRMZM2G347447_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G37090.1 (Glycine max), 5'ss of exon 2
TGCTTCAAAAGAGGCTTGGGATGATTACAATAGGTATCTTTCTGACAAGAAAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAGgttttt--tttttttcaatttctccatctaatttgctttaactttattgaaaat-atggccttcttgatctatt-gtactccctccattcaaaattataagaca
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TGCATCAAAAGAGGCATGGGATGATTACAATAGATATCTTTCAGACAATAAAGCAAATGAGAAGGAAGTCTGGGTTGTCAAGAAGGGCATCAAGAAACATgtatgaagcatatttaattttctttaatatatttatattgtgttttttaggagttgagaacagaataaccaaacagtaaaaaatgtaaggaaagatttta----
upper sequence: GRMZM2G347447_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G33340.1 (Glycine max), 5'ss of exon 2
TGCTTCAAAAGAGGCTTGGGATGATTACAATAGGTATCTTTCTGACAAGAAAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAGgttttt--tttttttcaatttctccatctaatttgctttaactttattgaaaat-atggccttcttgatctatt-gtactccctccattcaaaattataagaca
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TGCATCAAAAGAGGCGTGGGATGATTACAATAGATATCTTTCAGACAAGAAAGCAAATGAGAAGGAAGTCTGGGTTGTCAAGAAGGGCATCAAGAAACATgtatgaagcatatttaattttcttgaatatatttatattgtgtttttaaggagttgagaacagaataaccaaacagtaaaaaatgtaaggaagattttaa----
upper sequence: GRMZM2G347447_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT5G44240.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCTTCAAAAGAGGCTTGGGATGATTACAATAGGTATCTTTCTGACAAGAAAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAGgt-----tttttttttttcaatttctccatctaatttgctttaactttattgaaaatatggccttcttgatctattgtactccctccattcaaaattataagaca
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TGCTTCCAAAGAAGCTTGGGATGATTACCACAGATATCTATCAGATAAGAAAGCAAATGAGAAAGAAGTTTGGATCGTGAAACAGGGGATCAAGAAGCATgtatgaatcacttttgcatgattttttcatggcgattgatttttaggtggtgatagtttgtgttaattgtagtagtatgttgcttgtag----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93013258|gb|EB638778.1|EB638778EST: AAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAG ATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAAT
genomic: AAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAGgttttttttt ... tgttccgtagATCAAAGCACAGGAGGTACATGTTGGAGATTTAGTGTGGCTCCATGAGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTTCAAAAGAGGCTTGGGATGATTACAATAGGTATCTTTCTGACAAGAAAGCAAATGAGAGGAAAATATGGTTGGTAAAGGATGGCGTCCGCATACAGgttttttttttttcaatttctccatctaatttgctttaactttattgaaaatatggccttcttgatctattgtactccctccattcaaaattataagaca
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG