1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGACCGAATTCCTGGGCCAGGTGCCCCTCCTGCAGTGCCTCCCGGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacctagcgcgtccgtgggcgctactgtgcgctagcaggctggatcgattatcgtttgatcagtttcttgtgtttgaggtggataccctgtgctt...
species | Zea mays |
transcript | GRMZM2G344476_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|148956464|gb|EC902291.2|EC902291
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|74238643|gb|DT646557.1|DT646557
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|211119071|gb|FL021982.1|FL021982
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|149104205|gb|EE289638.2|EE289638
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|148936448|gb|EC880552.2|EC880552
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|149112589|gb|EE191373.2|EE191373
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|91872284|gb|EB402241.1|EB402241
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|71315516|gb|DR794364.1|DR794364
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|50331303|gb|CO526429.1|CO526429
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|148958992|gb|EE010517.2|EE010517
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|148944150|gb|EC889238.2|EC889238
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|4730512|gb|AI649678.1|AI649678
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|71315960|gb|DR794668.1|DR794668
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACAEST: gi|91875931|gb|EB405888.1|EB405888
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
EST: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACG AACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
genomic: GGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacct ... tacgttgcagAACCTGGTGACTATGTCGCTCGCGAAGGTGAACCTGTCAATGGCCTTTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACCGAATTCCTGGGCCAGGTGCCCCTCCTGCAGTGCCTCCCGGGTTCCTCTATCCGCAGAATCGCGGAGGCCGTCCAGGTCAAGAACTACGgtacgtacctagcgcgtccgtgggcgctactgtgcgctagcaggctggatcgattatcgtttgatcagtttcttgtgtttgaggtggataccctgtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC