Sequence
atgc intronic sequence ATGC exonic sequenceGAAGAAGGAGAAGGCTCTGGTCAAGAAGAAGAAGTCCATCGAGAGCCGCAAGCTCATCTTCACCCGTGCAAAGCAGTACGCCGAGGAATATGATGCCCAGgttagatcgccgctcctaacctgcctgtagactattcgtgcggggtggttggtaggatttatgtgcagcattccattttcatccttatggcctgtggaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g51630.2 (Oryza sativa), 5'ss of exon 2
GAAGAAGGAGAAGGCTCTGGTCAAGAAGAAGAAGTCCATCGAGAGCCGCAAGCTCATCTTCACCCGTGCAAAGCAGTACGCCGAGGAATATGATGCCCAGgttagatcgccgctcctaacctgcctgtagactattcgtgcggggtggttggtaggatttatgtgcagcattccattttcatcc---ttatggcctgtggaat
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GAGCAAGGAGAAGGCCGTCGCCGAGAAGAAGAAGTCCATCGAGAGCCGCAAGCTCATCTTCTCCCGCGCCAAGCAGTACGCCGAGGAGTACGAGGCCCAGgttagatcgttggcccccacatgatccattcccgtctcgatgttatattttgcgtggc--aaagacagcgattccgtgggatctgggtttggtactcccaaa-
upper sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 2
GAAGAAGGAGAAGGCTCTGGTCAAGAAGAAGAAGTCCATCGAGAGCCGCAAGCTCATCTTCACCCGTGCAAAGCAGTACGCCGAGGAATATGATGCCCAGgttag-atcgccgctcctaacctgcctgtagactattcgtgcggggtggttggtaggatttatgtgca-gcattccattttcatccttatggcctgtggaat
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CAGGAAGGAGAAGGCGCTCGCCGAGAAGAAGAAGGCCGTCGAGAGCCGCAAGCTCATCTTCGCCCGCGCCAAGCAGTACGCCCAGGAGTACGACGCGCAGgtgagcagagcaacctccccgctgcccgttgattcgcggaaccctgtggcgtctaggaatggttcgtttagatttgcgttgcgcatcgacgcatcgtgaa--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9461698|gb|BE453860.1|BE453860EST: AGCTCATCTTCACCCGCGCAAAGCAGTACGCCGAGGAATACGATGCCCAG GAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGGTTC
genomic: AGCTCATCTTCACCCGTGCAAAGCAGTACGCCGAGGAATATGATGCCCAGgttagatcgc ... cttggagcagGAGAAGGAACTGGTGCAGCTTAAGCGCGAGGCCCGTTTGAAGGGTGGTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGAAGGAGAAGGCTCTGGTCAAGAAGAAGAAGTCCATCGAGAGCCGCAAGCTCATCTTCACCCGTGCAAAGCAGTACGCCGAGGAATATGATGCCCAGgttagatcgccgctcctaacctgcctgtagactattcgtgcggggtggttggtaggatttatgtgcagcattccattttcatccttatggcctgtggaat
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG