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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGCACGCGGCCGGGGCGGGGCTCGTCGACGGGGCCTTCGTCGGCGCCCACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtcgttccccatcaatcgaccgaccccctcttctcgagtatttccttccgcgataagaaatgaggctggttttttcatgcgaaacgtctagaa...

Basic information

species Zea mays
transcript GRMZM2G340656_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G340656_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g10840.1 (Oryza sativa), 5'ss of exon 2
CGGCGCACGCGGCCGGGGCGGGGCTCGTCGACGGGGCCTTCGTCGGCGCCCACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtcgttccccatcaatcgacc--gaccccc------tcttctcgagtatttccttccgcg-ataagaaatgaggctggttttttcatgcgaaacgtctagaa
||||||||||| |||| || |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||   |   || |||   ||  ||   |       |  |||    |   |  ||      | |  |  | |    | ||||  |||  ||||  | |  | 
CGGCGCACGCGTCCGGCGCCGGGCTCGTCGACGGCGCCTTCGTCGGCGCCGACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagcaatctcacagaattaatttcccaagatttctacaaatttgtcttcgctgcatttttgaattcacagaattttaaagagtttttggcatctgaaat-tttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149095307|gb|EE180942.2|EE180942
EST:     CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG                         GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: gi|149099493|gb|EE185532.2|EE185532
EST:     CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG                         GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: gi|76916829|gb|DV166569.1|DV166569
EST:     CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG                         GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: gi|76292195|gb|DV031763.1|DV031763
EST:     CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG                         GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: gi|149080599|gb|EE169642.2|EE169642
EST:     CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG                         GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: gi|74243842|gb|DT651756.1|DT651756
EST:     CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG                         GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: gi|148959654|gb|EC905582.2|EC905582
EST:     CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG                         GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: gi|94477769|gb|EB706727.1|EB706727
EST:     CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG                         GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
EST: gi|78078282|gb|DV506697.1|DV506697
EST:     CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCG                         GGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA
genomic: CACGCCGGCGAGGCCAAGAGCCACCACGTCTTCACCTTCGGCACGCTCCGgtgagtagtc ... cgccgatcagGGACTGCCGGTTCCTGTGCCTGTTCCGGTTCAAGCTGTGGTGGATGACGCA