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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGACCCATGGCCGCGCATCTCGCAGGGCGCCAAGGACCTCGTCAGGAAGATGCTCAACCCTGACCCCAAGCAGCGGATTTCTGCATACGACGTCCTCAgtgagcgtttgcttctttctttttttctctctctctctctctcgtttgtttgttcctgaacatcagaaacagcagcagcatgacagattgacagtgagtactgaaacggccggtggtgcctctctgtggcgttcgtgcag

Basic information

species Zea mays
transcript GRMZM2G340224_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G340224_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g41270.1 (Oryza sativa), 5'ss of exon 3
AGCGACCCATGGCCGCGCATCTCGCAGGGCGCCAAGGACCTCGTCAGGAAGATGCTCAACCCTGACCCCAAGCAGCGGATTTCTGCATACGACGTCCTCAgtgagcgtttgcttctttctttttttctctctctctctctctcgtttgtttgttcctgaacatcagaaacagcagcagcatgacagattgacagtgagtactgaaacggccggtggtgcctctctgtggcgttcgtgcag
||||| |||||| ||||||||||||| |||||||||||||| ||||||  ||||||| |  |||||||||||||| ||||||||||||| ||||| |||||||||      ||||  | |    |   |   |    ||| ||           ||||||  |      |||  | |  |||     ||     |  || | |                                     
AGCGAGCCATGGTCGCGCATCTCGCATGGCGCCAAGGACCTTGTCAGGCGGATGCTCCATTCTGACCCCAAGCAGAGGATTTCTGCATATGACGTGCTCAgtgagtacc--cttcactttacgctgaacatcccaaatctttcaaca------ccctgaattttt----caggtgaatgatgctgtttttgttttctgtccag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21481043|gb|BQ577726.1|BQ577726
EST:     CTGCATACGACGTCCTCA                         ACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
EST: gi|21480881|gb|BQ577564.1|BQ577564
EST:     CTGCATACGACGTCCTCA                         ACCATCCG-GGATC-AGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
EST: gi|21390432|gb|BQ528481.1|BQ528481
EST:     CTGCATACGACGTCCTCA                         ACCATCCG-GGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
EST: gi|87154477|gb|DY399266.1|DY399266
EST:     CTGCATACGACGTCCTCA                         ACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
EST: gi|21330105|gb|BQ485486.1|BQ485486
EST:     CTGCATACGACGTCCTCA                         ACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA
genomic: CTGCATACGACGTCCTCAgtgagcgttt ... gttcgtgcagACCATCCGTGGATCAAGGAGGACGGCGAGGCGCCGGACACGCCGCTGGACA