Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCATGAAGTCGGAGCTGCAGCACGCCAGGGACGCCGTCCGCTGGGGCGCCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggagttgttgccttcctgttcctgctcctgttcctcatcgagcgagtcatggtcaaactcactagctagtagtacaagcagcacagcacgaaag...

Basic information

species Zea mays
transcript GRMZM2G331566_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G331566_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g21070.1 (Oryza sativa), 5'ss of exon 2
CCTCATGAAGTCGGAGCTGCAGCACGCCAGGGACGCCGTCCGCTGGGGCGCCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggagttgttgccttcctgttcctgctcctgttcctcatcgagcgagtcatggtcaaactcactagctagtagtacaagcagcacagcacgaaag--
 |||||||||   ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||||| |||||||||||| |             | | |     | | | | |||  ||| || |     ||   ||| |  |  ||| |  ||       || |  || | |       
ACTCATGAAGGGTGAGCTCCAGCACGCCAGGGACGCCGTCCGCTGGGGCTCCGACTACCTCCTCAAGGCCACCGCCCACCCGGACACCGTCTACGTCCAGgtacacccctcaacaccatcctcacacattcacttgt--ctcgtccatttgctcgccgtcgacattcctaccgggttccgtgcgcggttcatcgctttgtta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148934809|gb|EC878856.2|EC878856
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|86474770|gb|DY241140.1|DY241140
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|148953446|gb|EE152948.2|EE152948
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|76917758|gb|DV166992.1|DV166992
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|93014836|gb|EB640356.1|EB640356
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACAAAGGAACACGCGTGCT
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCT
EST: gi|76013164|gb|DT940334.1|DT940334
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|94477648|gb|EB706606.1|EB706606
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|78078544|gb|DV506956.1|DV506956
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|76916881|gb|DV166588.1|DV166588
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|89757861|gb|DY687271.1|DY687271
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|76280981|gb|DV020549.1|DV020549
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|148936942|gb|EC881098.2|EC881098
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|71317904|gb|DR795711.1|DR795711
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|76290456|gb|DV030024.1|DV030024
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|211410926|gb|FL176045.1|FL176045
EST:     CGACTACCTGCTCAGGGCCACGGCGCACCCGGACACCCATCTACGTCCAG                         GGTCGGTGAAC-CGACCAAGGACC
genomic: CGACTACCTGCTCAAGGCCACGGCGCACCCGGACACC-ATCTACGTCCAGgcaagtggag ... gtcatcacagG-TCGGTGA-CGCGACCAAGGACC
EST: gi|91051974|gb|EB162392.1|EB162392
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|78085424|gb|DV513817.1|DV513817
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCCAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|71435909|gb|DR816959.1|DR816959
EST:     CCGACTACCTGCTCAGGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|149008375|gb|EE040529.2|EE040529
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|78089657|gb|DV518031.1|DV518031
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|76294264|gb|DV033832.1|DV033832
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|78115118|gb|DV533506.1|DV533506
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|101399233|gb|EB821490.1|EB821490
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|148947951|gb|EC893450.2|EC893450
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|149078461|gb|EE167241.2|EE167241
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|211413468|gb|FL176053.1|FL176053
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCANGGGAC-ACGCGTGCTGGGAGCGGCCGGAGGACAT
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGG-ACCACGCGTGCTGGGAGCGGCCGGAGGACAT
EST: gi|91876421|gb|EB406378.1|EB406378
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|94475886|gb|EB704844.1|EB704844
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|71302056|gb|DR787107.1|DR787107
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|74240358|gb|DT648272.1|DT648272
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|76281525|gb|DV021093.1|DV021093
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|50337397|gb|CO532523.1|CO532523
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|211410920|gb|FL176039.1|FL176039
EST:     CCGACTACCTTCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGAC-ACGCGTGCTGGGAGCG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCG
EST: gi|71438718|gb|DR819768.1|DR819768
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|74239147|gb|DT647061.1|DT647061
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|71447157|gb|DR828207.1|DR828207
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|78085332|gb|DV513725.1|DV513725
EST:     CGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCCACCGCGTGCTGGGAGCGGCCGGAGGACA
genomic: CGACTACCTGCTCAAGGCCACGGCGCACCCGGACACC-ATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACC-AC-GCGTGCTGGGAGCGGCCGGAGGACA
EST: gi|148932161|gb|EC875605.2|EC875605
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|71449498|gb|DR830548.1|DR830548
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|149009794|gb|EE041687.2|EE041687
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|148960078|gb|EE153322.2|EE153322
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|71332770|gb|DR803381.1|DR803381
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|78089194|gb|DV517578.1|DV517578
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|76930798|gb|DV172509.1|DV172509
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|148939716|gb|EC884393.2|EC884393
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|50326794|gb|CO521920.1|CO521920
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|93283898|gb|EB676162.1|EB676162
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
EST: gi|71766258|gb|DR964195.1|DR964195
EST:     CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAG                         GTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG
genomic: CCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 77

CCTCATGAAGTCGGAGCTGCAGCACGCCAGGGACGCCGTCCGCTGGGGCGCCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACCCCCAGGACGGTGTACAAGGTGGACCGTGGCACCCCGGGATCCG


Block sizes: 33 (upstream exon), 27 (downstream exon)
Score: 3

CCTCATGAAGTCGGAGCTGCAGCACGCCAGGGACGCCGTCCGCTGGGGCGCCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACCCCCAGGACGGTGTACAAGGTGGACCGTGGCACCCCGGGATCCG


Block sizes: 49 (upstream exon), 33 (downstream exon)
Score: 7

CCTCATGAAGTCGGAGCTGCAGCACGCCAGGGACGCCGTCCGCTGGGGCGCCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACCCCCAGGACGGTGTACAAGGTGGACCGTGGCACCCCGGGATCCG


Block sizes: 49 (upstream exon), 41 (downstream exon)
Score: 8

CCTCATGAAGTCGGAGCTGCAGCACGCCAGGGACGCCGTCCGCTGGGGCGCCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggag ... gtcatcacagGTCGGTGACGCGACCAAGGACCACGCGTGCTGGGAGCGGCCGGAGGACATGGACACCCCCAGGACGGTGTACAAGGTGGACCGTGGCACCCCGGGATCCG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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CCTCATGAAGTCGGAGCTGCAGCACGCCAGGGACGCCGTCCGCTGGGGCGCCGACTACCTGCTCAAGGCCACGGCGCACCCGGACACCATCTACGTCCAGgcaagtggagttgttgccttcctgttcctgctcctgttcctcatcgagcgagtcatggtcaaactcactagctagtagtacaagcagcacagcacgaaag

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