1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaagctggacagtactgtagaatatcattgcaaaattgctgtgtttgttttcaatgcgtgcacacaagttacccattcatccatattcctccat...
species | Zea mays |
transcript | GRMZM2G330650_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCG CTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCCEST: gi|61119571|gb|DN560532.1|DN560532
genomic: CAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaag ... acatttccagCTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCC
EST: CAAGCTAAACAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCG CTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCCEST: gi|78122353|gb|DV540737.1|DV540737
genomic: CAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaag ... acatttccagCTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCC
EST: CAAGCTAAGCAATTGGAAGATCTTAGTGTGAAAATGAAGGAGTGCAAGCG CTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCCEST: gi|32827098|gb|CD966776.1|CD966776
genomic: CAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaag ... acatttccagCTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCC
EST: GATCTTACTGTGAAAATGAAGGAGTGCAAGCG CTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTEST: gi|211019324|gb|FL371811.1|FL371811
genomic: GATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaag ... acatttccagCTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGT
EST: CMAGCTAAACAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCG CTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCCEST: gi|211320442|gb|FL345947.1|FL345947
genomic: CAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaag ... acatttccagCTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCC
EST: CAAGCTAAACAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCG CTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCCEST: gi|32827094|gb|CD966772.1|CD966772
genomic: CAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaag ... acatttccagCTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCC
EST: GATCTTACTGTGAAAATGAAGGAGTGCAAGCG CTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCCEST: gi|148961350|gb|EE012080.2|EE012080
genomic: GATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaag ... acatttccagCTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCC
EST: CAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCG CTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCC
genomic: CAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaag ... acatttccagCTTGATCAAAGAGTTTGATCGCATTCTCAAAGATGAGGAGTCAAATAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAAGCAATTGGAAGATCTTACTGTGAAAATGAAGGAGTGCAAGCGgtaggtcaagctggacagtactgtagaatatcattgcaaaattgctgtgtttgttttcaatgcgtgcacacaagttacccattcatccatattcctccat
- - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG