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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatctttccctgacagttggaagaatttgttcttggtattctcgtggttcgggagatgctgagacagttttgatgttctcgatgccgtcag

Basic information

species Zea mays
transcript GRMZM2G329144_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G329144_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g24380.1 (Oryza sativa), 5'ss of exon 2
GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgta-------------cgctatctttccctgacagttgg-aagaatttgttcttggtattctcgtggttcgggagatgctgagacagttttgatgttctcg---atgccgtcag------------------
||||||||||||||||| ||||||||||| |  |||||||||||||| ||  | || || ||||||||||||||||||||             | | ||| |  ||| ||  | |    |  |    | ||  | ||    |  ||  ||   ||   | |  || ||  ||    ||   ||||  | |                   
GATTGCAACGGCAAGGAGGTGAGCCTGGAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATGgtatatacttcgccatcacgatcctgtcctcaccatggtcgtgggtagaattttcttttttctttttttttgggtgtgtgaaaatggtgttcttgactgcgggtatgctttgatttgatctgtaccgggcag

upper sequence: GRMZM2G329144_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G33650.2 (Glycine max), 5'ss of exon 2
GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgta--------cgctatctttccctgaca-------------------gttggaagaatttgttcttggtat--tctcgtggttcgggagatgctgagacagtt--ttgatgttctcgatgccgtcag---
|||   || ||||  || |||| |||    |||||||| |||||||| || ||||| ||||||||||| || ||||||||        | |  | |||  || ||                    | |  || ||||   ||||  | |  | |  |  ||     | |  || |  || |  || |  || | ||||    | |   
GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcag

upper sequence: GRMZM2G329144_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G33650.3 (Glycine max), 5'ss of exon 2
-----------------------GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgta--------cgctatctttccctgaca-------------------gttggaagaatttgttcttggtat--tctcgtggttcgggagatgctgagacagtt--ttgatgttctcgatgccgtcag---
                       |||   || ||||  || |||| |||    |||||||| |||||||| || ||||| ||||||||||| || ||||||||        | |  | |||  || ||                    | |  || ||||   ||||  | |  | |  |  ||     | |  || |  || |  || |  || | ||||    | |   
ATCTCTTCTCATGGTTGGCACAGGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71441290|gb|DR822340.1|DR822340
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA