Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatctttccctgacagttggaagaatttgttcttggtattctcgtggttcgggagatgctgagacagttttgatgttctcgatgccgtcag

Basic information

species Zea mays
transcript GRMZM2G329144_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G329144_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g24380.1 (Oryza sativa), 5'ss of exon 2
GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgta-------------cgctatctttccctgacagttgg-aagaatttgttcttggtattctcgtggttcgggagatgctgagacagttttgatgttctcg---atgccgtcag------------------
||||||||||||||||| ||||||||||| |  |||||||||||||| ||  | || || ||||||||||||||||||||             | | ||| |  ||| ||  | |    |  |    | ||  | ||    |  ||  ||   ||   | |  || ||  ||    ||   ||||  | |                   
GATTGCAACGGCAAGGAGGTGAGCCTGGAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATGgtatatacttcgccatcacgatcctgtcctcaccatggtcgtgggtagaattttcttttttctttttttttgggtgtgtgaaaatggtgttcttgactgcgggtatgctttgatttgatctgtaccgggcag

upper sequence: GRMZM2G329144_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G33650.2 (Glycine max), 5'ss of exon 2
GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgta--------cgctatctttccctgaca-------------------gttggaagaatttgttcttggtat--tctcgtggttcgggagatgctgagacagtt--ttgatgttctcgatgccgtcag---
|||   || ||||  || |||| |||    |||||||| |||||||| || ||||| ||||||||||| || ||||||||        | |  | |||  || ||                    | |  || ||||   ||||  | |  | |  |  ||     | |  || |  || |  || |  || | ||||    | |   
GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcag

upper sequence: GRMZM2G329144_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G33650.3 (Glycine max), 5'ss of exon 2
-----------------------GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgta--------cgctatctttccctgaca-------------------gttggaagaatttgttcttggtat--tctcgtggttcgggagatgctgagacagtt--ttgatgttctcgatgccgtcag---
                       |||   || ||||  || |||| |||    |||||||| |||||||| || ||||| ||||||||||| || ||||||||        | |  | |||  || ||                    | |  || ||||   ||||  | |  | |  |  ||     | |  || |  || |  || |  || | ||||    | |   
ATCTCTTCTCATGGTTGGCACAGGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTTCTTGTAGTTAACGTCGCTTCAAAATGgtatttttacacaccctttttttctaacccaactttctgcatgtgtttgctataaaaattcaatcttactttctttttatccttttattgcttttgggttagctgattaactttttggatgtaaactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211496099|gb|FL377912.1|FL377912
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211131056|gb|FL391854.1|FL391854
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211501843|gb|FL388426.1|FL388426
EST:     GAAACCTACAAGGGGAAGGTCGTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211500170|gb|FL426488.1|FL426488
EST:     GAAACCTACAAGGGGAARGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211084683|gb|FL387358.1|FL387358
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTTACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|22545491|gb|BU097850.1|BU097850
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211530013|gb|FL385894.1|FL385894
EST:     GAAACCTACAAGGAGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211520783|gb|FL373488.1|FL373488
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211225829|gb|FL402237.1|FL402237
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211329903|gb|FL381786.1|FL381786
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211292210|gb|FL380933.1|FL380933
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211017372|gb|FL408588.1|FL408588
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|101391621|gb|EB817747.1|EB817747
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211278589|gb|FL376801.1|FL376801
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211060112|gb|FL393160.1|FL393160
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211009248|gb|FL416491.1|FL416491
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211530055|gb|FL388002.1|FL388002
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211525016|gb|FL424286.1|FL424286
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211284108|gb|FL384407.1|FL384407
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211214723|gb|FL394680.1|FL394680
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|8367944|gb|BE050889.1|BE050889
EST:     TAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|87157407|gb|DY402196.1|DY402196
EST:     G-AACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211458918|gb|FL402421.1|FL402421
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211147264|gb|FL387786.1|FL387786
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|60356015|gb|DN222988.1|DN222988
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211337056|gb|FL419792.1|FL419792
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|67011682|gb|CO440431.1|CO440431
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|60358353|gb|DN225326.1|DN225326
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211518880|gb|FL413873.1|FL413873
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211063314|gb|FL403455.1|FL403455
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|37379775|gb|CF626646.1|CF626646
EST:     CGCCTACAAATG                         TGGGTTCACGGAGACCAATCACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: CGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|116822363|gb|EC865760.1|EC865760
EST:     GAAACCTACAAGGGGAAGGTCGTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211429056|gb|FL404563.1|FL404563
EST:     GAAACCTACAAGGGGAAGGTCGTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211065174|gb|FL369022.1|FL369022
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211082960|gb|FL420013.1|FL420013
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTNMTCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211496470|gb|FL394442.1|FL394442
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211401198|gb|FL425445.1|FL425445
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|26558316|gb|CA830551.1|CA830551
EST:     AAAACTAACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: AAACCT-ACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|13382326|gb|BG459001.1|BG459001
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|47961660|gb|CN844369.1|CN844369
EST:     GAGACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|32919699|gb|CF024511.1|CF024511
EST:     GAAACCTACAAGGGGAAGGTCGTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211341878|gb|FL422746.1|FL422746
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGWTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211209105|gb|FL370007.1|FL370007
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|61236533|gb|DN586283.1|DN586283
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGTTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211506468|gb|FL386341.1|FL386341
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211455876|gb|FL373123.1|FL373123
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211266758|gb|FL409742.1|FL409742
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211221434|gb|FL386101.1|FL386101
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211081760|gb|FL378025.1|FL378025
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211136736|gb|FL400349.1|FL400349
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211003170|gb|FL398082.1|FL398082
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211429343|gb|FL418455.1|FL418455
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211093343|gb|FL430023.1|FL430023
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211158277|gb|FL406080.1|FL406080
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211057368|gb|FL403435.1|FL403435
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTT
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGT-
EST: gi|211325357|gb|FL370094.1|FL370094
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211045305|gb|FL393094.1|FL393094
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211436512|gb|FL387571.1|FL387571
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|9953563|gb|BE640146.1|BE640146
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211516379|gb|FL408121.1|FL408121
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211107550|gb|FL406867.1|FL406867
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|60341752|gb|DN208725.1|DN208725
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211466205|gb|FL385417.1|FL385417
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211408331|gb|FL399287.1|FL399287
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211439776|gb|FL418972.1|FL418972
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211317842|gb|FL424596.1|FL424596
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211146309|gb|FL420905.1|FL420905
EST:     GAAACCTACAAGGGGAAGGTCGTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211026994|gb|FL377496.1|FL377496
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
EST: gi|211227878|gb|FL402241.1|FL402241
EST:     GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG                         TGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA
genomic: GAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 236

GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 212

GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 215

GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 294

GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATGgtacgctatc ... atgccgtcagTGGGTTCACGGAGACCAATTACACGCAGCTGACGGAGCTTTATCAGAAGTACAGGGACAAAG