Sequence
atgc intronic sequence ATGC exonic sequenceGAAGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgcgcgcatctcttactccctccttgctcgcttgccttgttccgatacgtgttatctgaaatgttctacccttcaacctttagaacttgaagtatta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G324314_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os11g06750.1 (Oryza sativa), 5'ss of exon 2
GAAGAGGAG-GGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgcgcgcatctcttactccctccttgctcgcttgccttgttccgatacgtgttatctgaaatgttctacccttcaacctttagaacttgaagt-atta--
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-AGGAGGAGTAAGAAGATGTCGCACAGGAAGTTCGAGCACCCGAGGCACGGATCCCTCGGCTTCCTCCCGAGGAAGCGCTCCTCCCGCCACCGCGGCAAGGgtatgctcac-tcacctactctctctct-ctctctcttttgcttgtgcggtgctgtatttgtagagct-tgcgccttgtatggtagagtagaaacttgttgga
upper sequence: GRMZM2G324314_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G36940.1 (Glycine max), 5'ss of exon 2
GAAGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgcgcgcatctcttactccctccttgctcgcttgccttgttccgatacgtgtt-atctgaaatgttctacccttcaacctttagaacttgaagtatta
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AATTTGGAAAACAAGATGTCTCACCGCAAGTTCGAGCACCCGAGACACGGTTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGGgtgatcctcttttttttgttttgtt-ttgttcgtttctgttgtttactttcagatttaaatgatgttgttaagggttttcttttcagatctaaaaacattt
upper sequence: GRMZM2G324314_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G36780.1 (Glycine max), 5'ss of exon 2
GAAGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgcgcgcatctcttactccctcc----ttgctcgcttgccttgttccgatacgtgttatctgaaatgttctacccttcaacctttagaacttgaagtatta-
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-----GAGGAGAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGTTCACTGGGATTTCTTCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgta---atttattttttaaattatccagtattcattacatggttttctgtcttgtgagttcttttaattatcatgaa--tagctgttgtgaatttgcaaagtcaa
upper sequence: GRMZM2G324314_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA20G30810.1 (Glycine max), 5'ss of exon 2
GAAGAGGAGGGCA-GGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgta-cgcgcgcatctcttactccctccttgctcgcttgcct--tgttccgatacgtgttatctgaaatgttctacccttcaacctttagaacttgaagtatta-
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---GAGGAGAATAAGGATGTCTCACAGGAAGTTCGAGCACCCAAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGgtaattcttttttgtcttatgttctttcaattaacataattgctgttgtga-atttctaaagtaaaacaagatgctgttg---tgttaaacatgagtatgccga
upper sequence: GRMZM2G324314_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G00280.1 (Glycine max), 5'ss of exon 2
GAAGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgcgcgcatctcttactccctcctt-gctcgcttgcc-ttgttccgatacgtgttatctg-aaatgttctacccttcaacctttagaacttgaagtatta
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TGAATTTGGAAAAAGATGTCTCACCGGAAGTTCGAGCACCCGAGACATGGTTCCCTTGGCTTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGCGGAAAGGgtgatc-tacattttttgtttgtacctttggatgtttgatactgttcttcatctcgacatttataaatgatgttgcaaagggttttcagatctaaaataac--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211459160|gb|FL411548.1|FL411548EST: CTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGG TGAAGTCATTCCCTAGGGATGACCCCAAGAAGCCTTGCCATCTCACTGCCT
genomic: CTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgcgcgc ... gtttttgcagTGAAGTCATTCCCTAGGGATGACCCCAAGAAGCCTTGCCATCTCACTGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGAGGAGGGCAGGATGTCGCACCGTAAGTTCGAGCACCCGAGGCACGGCTCCCTCGGCTTCCTTCCCAGGAAGCGCTCCTCCCGTCACCGCGGCAAGGgtacgcgcgcatctcttactccctccttgctcgcttgccttgttccgatacgtgttatctgaaatgttctacccttcaacctttagaacttgaagtatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC