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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGTAGGGACCTGATATGTATCGCTCAAATAGGCTCAGGGAAAACACTATCTTATCTGCTACCTGGGTTGGTTCATGTTGGTGCCCAGCCACAGCTAGgtttgtttcctataaacttgctatgagctttctgcattttatgcattgtgattgtaatgcctttag

Basic information

species Zea mays
transcript GRMZM2G324146_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324146_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g68320.3 (Oryza sativa), 5'ss of exon 3
AAGGGTAGGGACCTGATATGTATCGCTCAAATAGGCTCAGGGAAAACACTATCTTATCTGCTACCTGGGTTGGTTCATGTTGGTGCCCAGCCACAGCTAGgtttgtttcc--tataaacttgctatgagctttctgcattttatgcattgtgattgtaatgcctttag--------------
||||| |||||| ||||  ||||||| ||||  ||||| ||||||||||||||||| || || ||||||||||||||||||||||| ||||| |  |||||||||||||   ||   | ||| | |  |   |||  ||||||   ||||| | |  ||||  |  |               
AAGGGCAGGGACATGATCGGTATCGCACAAACTGGCTCTGGGAAAACACTATCTTACCTTCTCCCTGGGTTGGTTCATGTTGGTGCACAGCCTCGACTAGgtttgtttctgttacggaattgatgtacgtgctctctattttaa--attgtcaattgaatgaatgcattgtaacgggtgcag