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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGAGGAGCAAAAGAAGCTGGATGTACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgctctcctacactacatacacatacacccgtacacgtcccaggttctcggcttaggcattgactttggcactctgcgctttcttgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G322953_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G322953_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g36270.3 (Oryza sativa), 5'ss of exon 2
GGCGAGGAGCAAAAGAAGCTGGATGTACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgctctcctacactacatacacatacacccgtacacgtcccaggttctcggcttaggcattgactttggcactctgcgctttcttgcgtgcag
|| |||||||| |||||||| || || || |||||||| |||||||| |||||||||||||||||||||||||| ||||  |  |     | | ||       ||       ||||  |   | ||||      |     |||||  || |||||    | ||  ||  |||||
GGTGAGGAGCAGAAGAAGCTTGACGTGCTCTCCAACGAAGTCTTCGTCAAGGCGCTCGTCAGCAGCGGCCGCACGgtaatacagtac---agattagcagtttatgttttgctacagat---aagttcagtttctgaaacttgacagtgacactccattcctttctg--tgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87152940|gb|DY397729.1|DY397729
EST:     TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACC                         TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
EST: gi|22490108|gb|BU050031.1|BU050031
EST:     TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACC                         TGTGTCCTCGTGTCTGAAGAGAACGAGGAG
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAG
EST: gi|211164076|gb|FL013514.1|FL013514
EST:     TCCTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGAACC                         TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
EST: gi|78104993|gb|DV523411.1|DV523411
EST:     TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACC                         TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
EST: gi|211164070|gb|FL013508.1|FL013508
EST:     TCCTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACC                         TGTGTCCTCGTGTCTGAAGAGAACGAGGAGG
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGG
EST: gi|18654939|gb|BM499744.1|BM499744
EST:     TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACC                         TGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC
genomic: TACTGTCCAACGAGGTCTTCGTGAAGGCGCTCGTCAGCAGCGGCCGCACCgtaacgcgct ... ttgcgtgcagTGTGTCCTCGTGTCTGAAGAGAACGAGGAGGCCATCTTCGTCGACCCGGCC