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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGGGCAATTGAAAAGGCAAAAGCTGCTGCAGATGCAAAGGAGCGAATTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAGgtagctgatgtcattatgcatgcatttttttgttgcatacacaaaataaacactgttctaatccgcattcttgacacag

Basic information

species Zea mays
transcript GRMZM2G316635_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G316635_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g44310.2 (Oryza sativa), 5'ss of exon 2
GGAGAGGGCAATTGAAAAGGCAAAAGCTGCTGCAGATGCAAAGGAGCGAATTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAGgtagctgatgtcattatgcatgc-atttttttgttgcatacacaaaa--taaacactgttctaatc-cgcattcttgacacag---------------------------------
|||||| |||||||||||||||||||||||||||||||||||||||||||| |  |  || || ||||| |||||||| ||||| ||| |  |||||||||||| ||||||||||||   |   |   |   ||| || ||  || |  |||| | |  ||||| |    | |  | | ||                                   
GGAGAGAGCAATTGAAAAGGCAAAAGCTGCTGCAGATGCAAAGGAGCGAATGGAAAGATTTAGATCCTCCTTCAAGGACAGTTTCAAGTCTACTAATCAGgtagttgatgtcattatattttttacactacagttccaaactaaatacttaaatatttgtctaagcatctagtaataatacctttaagtagtatctcatccatgttcttgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22542029|gb|BU092467.1|BU092467
EST:     TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAG                         GACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA
genomic: TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAGgtagctgatg ... cttgacacagGACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA
EST: gi|22472441|gb|BU036921.1|BU036921
EST:     TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAG                         GACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA
genomic: TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAGgtagctgatg ... cttgacacagGACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA
EST: gi|21088911|gb|BQ401224.1|BQ401224
EST:     TTGGGAAGCTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAC                         GACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA
genomic: TTGGGAAGTTCAGGTCCTCTTTCAAGGATAGTTTTAAGGCACCTAATCAGgtagctgatg ... cttgacacagGACAATCAACATGAGGCATCATCTCAGAAGACGGCTTATAATAAGCATGGA