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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCCTTTTGTTTTGGGAAATAAGGCGCTCAGACTTCGGTATTTCAATGACTCATCATGTAGCAACCGTCTGTCTGATAGCACTGTCTTACATATTCAGgtacactggctatctatatttttttatttatatttgaatccaagtcaagttgcattctcatacatctttcttctcaacacatactcagacactgatggtttgtgaatatttctttatagtgccagttgcattttaaacacaatatcatttgaaaatcgtttttctaaaacag

Basic information

species Zea mays
transcript GRMZM2G315726_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G315726_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g49590.1 (Oryza sativa), 5'ss of exon 3
TTGCCCTTTTGTTTTGGGAAATAAGGCGCTCAGACTTCGGTATTTCAATGACTCATCATGTAGCAACCGTCTGTCTGATAGCACTGTCTTACATATTCAGgtacactggctatctatattttt-------ttatttatatttgaatccaagtcaagttgcattctcatacatctttcttct-caacacatactcagacactgatggtttgtgaatatttctttatagtgccagttgcattttaaacacaatatcatttgaaaatcgtttttctaaaacag
|||| |||   || |||||||||| ||||||||| || ||||||||||||  ||||||||||| | | ||   ||| |||||| ||||||||||||||||||| | | |||||||||   |||       |||| ||| ||  |||| | ||| |||| |  |||  ||  || ||||  | |     | ||| |   |                                                                                 
TTGCTCTTCAATTCTGGGAAATAAAGCGCTCAGATTTTGGTATTTCAATGGTTCATCATGTAGTATCTGTTATTCTCATAGCATTGTCTTACATATTCAGgtatattagctatctatgaatttgtcaagcttatctatgttgaaatcaatgtctagtttccctctggtatgtcgttctaatgctgtgaacacttaacgag--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24934587|gb|CA452805.1|CA452805
EST:     ACTCATCATGTAGCAACCGTCTGTCTGATAGCACTGTCTTACATATTCAG                         ATTTGCTCGGGTGGGTTCAGTTGTCCTTGCCATTCATGATGCTACTGATGT
genomic: ACTCATCATGTAGCAACCGTCTGTCTGATAGCACTGTCTTACATATTCAGgtacactggc ... tctaaaacagATTTGCTCGGGTGGGTTCAGTTGTCCTTGCCATTCATGATGCTACTGATGT