1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TATTGGCATTGTCTGTGACGTACAACGAGCCATGGTTCACAACCACAAGAAATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAAgtatgttgaacgtcttctcgattttgagggggcaagatcttctttggccagatttttataattttatttgtaccaagttatagcaaatgttattttatttcccag
species | Zea mays |
transcript | GRMZM2G315726_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAA ATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTCEST: gi|211275405|gb|FL063658.1|FL063658
genomic: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAAgtatgttgaa ... tatttcccagATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTC
EST: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAA ATTGAAACTCAAGACAGTCTATATGTATGTTGCTEST: gi|78084141|gb|DV512534.1|DV512534
genomic: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAAgtatgttgaa ... tatttcccagATTGAAACTCAAGACAGTCTATATGTATGTTGCT
EST: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAA ATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTCEST: gi|47962327|gb|CN845036.1|CN845036
genomic: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAAgtatgttgaa ... tatttcccagATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTC
EST: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAA ATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTC
genomic: AATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAAgtatgttgaa ... tatttcccagATTGAAACTCAAGACAGTCTATATGTATGTTGCTGGCTTTTACACATACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTGGCATTGTCTGTGACGTACAACGAGCCATGGTTCACAACCACAAGAAATTTCTGGGTTGGACCAGGCGATCAGATCTGGCCAGATCAAAAAATTAAgtatgttgaacgtcttctcgattttgagggggcaagatcttctttggccagatttttataattttatttgtaccaagttatagcaaatgttattttatttcccag
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