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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaagattcttctactttctgttgttattttacgaccttttgtttgcgattattgctttgctggagagttgcatttgcaggcaatgtacatgcc...

Basic information

species Zea mays
transcript GRMZM2G314679_T05
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31357552|gb|CD441909.1|CD441909
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211184335|gb|FL140041.1|FL140041
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211181937|gb|FL140035.1|FL140035
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|87157301|gb|DY402090.1|DY402090
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|7137590|gb|AW499170.1|AW499170
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211184344|gb|FL140050.1|FL140050
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|15313043|gb|BI478532.1|BI478532
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211184341|gb|FL140047.1|FL140047
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|22819508|gb|BU499598.1|BU499598
EST:     GGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|56382683|gb|CV985352.1|CV985352
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211184337|gb|FL140043.1|FL140043
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211344197|gb|FL190861.1|FL190861
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211184338|gb|FL140044.1|FL140044
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|62550301|gb|DN830721.1|DN830721
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|5928724|gb|AW055941.1|AW055941
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211006747|gb|FL429436.1|FL429436
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211181941|gb|FL140039.1|FL140039
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211181938|gb|FL140036.1|FL140036
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211184339|gb|FL140045.1|FL140045
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|33103253|gb|CF063213.1|CF063213
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211181939|gb|FL140037.1|FL140037
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTT-ACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211181940|gb|FL140038.1|FL140038
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211184343|gb|FL140049.1|FL140049
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG