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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaagattcttctactttctgttgttattttacgaccttttgtttgcgattattgctttgctggagagttgcatttgcaggcaatgtacatgcc...

Basic information

species Zea mays
transcript GRMZM2G314679_T04
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211282262|gb|FL038864.1|FL038864
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211282264|gb|FL038866.1|FL038866
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|87157301|gb|DY402090.1|DY402090
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|7137590|gb|AW499170.1|AW499170
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|28187926|gb|CB179536.1|CB179536
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211282263|gb|FL038865.1|FL038865
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|15313043|gb|BI478532.1|BI478532
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211282260|gb|FL038862.1|FL038862
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|22819508|gb|BU499598.1|BU499598
EST:     GGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211344197|gb|FL190861.1|FL190861
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|5928724|gb|AW055941.1|AW055941
EST:     GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211006747|gb|FL429436.1|FL429436
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
EST: gi|211282261|gb|FL038863.1|FL038863
EST:     GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG                         GAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG
genomic: GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaa ... tgtttcacagGAATCTTGCCCTTCTGTGAAGAACATTTTACTTCTGGATTCTGAAGGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGgtgcgaagaagattcttctactttctgttgttattttacgaccttttgtttgcgattattgctttgctggagagttgcatttgcaggcaatgtacatgcc

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