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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAGCCGACGGGGACCCCATCCGGTTCGCGAACGACCTCGATGTGCACAGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaagcgacgtaacaatccggcttctcattttcaaacgcctctgtattctctgctgaaagagtagctcaccagacaagagctgaatttgcag

Basic information

species Zea mays
transcript GRMZM2G307906_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149014537|gb|EE044171.2|EE044171
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148948292|gb|EC893809.2|EC893809
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAGA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|149029397|gb|EE286196.2|EE286196
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148948291|gb|EC893808.2|EC893808
EST:     CATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGAAGAAGGCACCGGGAGGCTGCTCAG
genomic: CATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|149069891|gb|EE158287.2|EE158287
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|149084689|gb|EE174175.2|EE174175
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCT
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCT
EST: gi|148939886|gb|EC884598.2|EC884598
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148960145|gb|EE153395.2|EE153395
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         AGACCATCTGAACATCCCTGT-AGAAGGAGAAAGCACCGGGAGGCTGC
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCC-TGTTAGAAGGAGAAGGCACCGGGAGGCTGC
EST: gi|148960914|gb|EE011604.2|EE011604
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|149106557|gb|EE188449.2|EE188449
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148932422|gb|EC876118.2|EC876118
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|149060202|gb|EE157176.2|EE157176
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148953528|gb|EE153037.2|EE153037
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148950757|gb|EC896357.2|EC896357
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148972509|gb|EE023471.2|EE023471
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGC
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGC
EST: gi|149107258|gb|EE189140.2|EE189140
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|149061131|gb|EE157391.2|EE157391
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|18660011|gb|BM500639.1|BM500639
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148957624|gb|EC903731.2|EC903731
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|149089005|gb|EE178156.2|EE178156
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148948376|gb|EC893892.2|EC893892
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|211358965|gb|FL314618.1|FL314618
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|211031208|gb|FL344488.1|FL344488
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148960572|gb|EE011188.2|EE011188
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCT
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCT
EST: gi|148948226|gb|EC893742.2|EC893742
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|149029327|gb|EE154705.2|EE154705
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|149027056|gb|EE046378.2|EE046378
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148950756|gb|EC896356.2|EC896356
EST:     ATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: ATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
EST: gi|148934314|gb|EC878340.2|EC878340
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAGGGCACCGGGAGGCTGCT
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCT
EST: gi|148952208|gb|EC898009.2|EC898009
EST:     AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAA                         GGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG
genomic: AGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 2 RNA-Seq libraries.


Block sizes: 41 (upstream exon), 9 (downstream exon)
Score: 2

GGGAAGCCGACGGGGACCCCATCCGGTTCGCGAACGACCTCGATGTGCACAGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAGGTATGATCCAGAAACAAGCGGTGTCCATGTCGTGCTCAAGGGGCTGGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1533

GGGAAGCCGACGGGGACCCCATCCGGTTCGCGAACGACCTCGATGTGCACAGGAATGGATCCGTATTCTTCACTGACACGAGCATGAGATACAGCAGAAAgtgagcaaag ... gaatttgcagGGACCATCTGAACATCCTGTTAGAAGGAGAAGGCACCGGGAGGCTGCTCAGGTATGATCCAGAAACAAGCGGTGTCCATGTCGTGCTCAAGGGGCTGGTG




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