1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTATCACTCCAATTGTAACATCTGGAATGGTGATGCAACTTCTAGTGGGATCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCTgtaagtgttgttgggtagtatagacatcaaattctatatgtattggtggatgctttgattatccatccttttatcaattgactgacattgagaactgcaaagctttatggtttttattcttgtatctggtgttttcatgtgattcatagtgtactttttacccag
species | Zea mays |
transcript | GRMZM2G307252_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCT AAATGGTGCGCAGAAGTTGCTGGGTATCCTTATTGC-ATTGGGAGAAGCCGEST: gi|211517030|gb|FL210551.1|FL210551
genomic: TCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCTgtaagtgttg ... ttttacccagAAATGGTGCGCAGAAGTTGCTTGGTATCCTTATTGCCATTGG-AGAAGCCG
EST: TCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCT AAATGGTGCGCAGAAGTTGCTTGGTATCCTTATTGCCATTGGAGAAGCCGTEST: gi|211360870|gb|FL288054.1|FL288054
genomic: TCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCTgtaagtgttg ... ttttacccagAAATGGTGCGCAGAAGTTGCTTGGTATCCTTATTGCCATTGGAGAAGCCGT
EST: TCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCT AAATGGTGCGCAGAAGTTGCTTGGTATCCTTATTGCCATTGGAGAAGCCGTEST: gi|211360871|gb|FL288055.1|FL288055
genomic: TCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCTgtaagtgttg ... ttttacccagAAATGGTGCGCAGAAGTTGCTTGGTATCCTTATTGCCATTGGAGAAGCCGT
EST: TCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCT AAATGGTGCGCAGAAGTTGCTTGGTATCCTTATTG
genomic: TCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCTgtaagtgttg ... ttttacccagAAATGGTGCGCAGAAGTTGCTTGGTATCCTTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCACTCCAATTGTAACATCTGGAATGGTGATGCAACTTCTAGTGGGATCAAAGATTATTGAAGTTGACAACAGTGTGAGGGAGGATCGTGCTCTGCTgtaagtgttgttgggtagtatagacatcaaattctatatgtattggtggatgctttgattatccatccttttatcaattgactgacattgagaactgcaaagctttatggtttttattcttgtatctggtgttttcatgtgattcatagtgtactttttacccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT