1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATCGCGTGGCCCTTGCGTCGTCCCTCTCGGCGGTGGCGCGGTCTGCTGGCCCCGCCGTGGCAGCGGCGCAGACCAAGCCCAGCGgtaattaaagtttttcatttctttgttcatgtgctctagtgtttgtcgtggagctgtataggtaaaagcttgccttttgtgtaccgtgactgaagaaatc...
species | Zea mays |
transcript | GRMZM2G306374_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCGCGGTCTGCTGGCCCCGCCGTGGCAGCGGCGCAGACCAAGCCCAGCG TTTCAGGAAAGAAACAAGTATTGATATCGTTGTCGGATAAAACGGACTTGGEST: gi|211026757|gb|FL253992.1|FL253992
genomic: GGCGCGGTCTGCTGGCCCCGCCGTGGCAGCGGCGCAGACCAAGCCCAGCGgtaattaaag ... tatcctacagTTTCAGGAAAGAAACAAGTATTGATATCGTTGTCGGATAAAACGGACTTGG
EST: GGCGCGGTCTGCTGGCCCCGCCGTGGCAGCGGCGCAGACCAAGCCCAGCG TTTCAGGAAAGAAACAAGTATTGATATCGTTGTCGGATAAAACGGACTTGGEST: gi|148936089|gb|EC880151.2|EC880151
genomic: GGCGCGGTCTGCTGGCCCCGCCGTGGCAGCGGCGCAGACCAAGCCCAGCGgtaattaaag ... tatcctacagTTTCAGGAAAGAAACAAGTATTGATATCGTTGTCGGATAAAACGGACTTGG
EST: GGCGCGGTCTGCTGGCCCCGCCGTGGCAGCGGCGCAGACCAAGCCCAGCG TTTCAGGAAAGAAACAAGTATTGATATCGTTGTCGGATAAAACGGACTTGG
genomic: GGCGCGGTCTGCTGGCCCCGCCGTGGCAGCGGCGCAGACCAAGCCCAGCGgtaattaaag ... tatcctacagTTTCAGGAAAGAAACAAGTATTGATATCGTTGTCGGATAAAACGGACTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCGCGTGGCCCTTGCGTCGTCCCTCTCGGCGGTGGCGCGGTCTGCTGGCCCCGCCGTGGCAGCGGCGCAGACCAAGCCCAGCGgtaattaaagtttttcatttctttgttcatgtgctctagtgtttgtcgtggagctgtataggtaaaagcttgccttttgtgtaccgtgactgaagaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaat