Sequence
atgc intronic sequence ATGC exonic sequenceGTCATTGGTCCCTATCGATCTGGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtagttagatgttgcttctaatgttataaacatggattccctagtttgcttactagaactatttgagaatgtgataatcttggcagtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G305254_T07 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 3
GTCATTGGTCCCTATCGATCTGGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtagttagatgttgcttctaatgtt--ataaacatggattccctagtttgcttactagaactatttgagaatgtgataatcttggcagtgcag
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GTCATTGGTCCATATCGATCTGGAAAGTCTTTTCTCCTCAACCAGCTTCTCTCTTTATCATGTGAAAAAGgtag----actctactcctggtgtttgagatgcataataggactaagagacct-ttagggctaat-gaaaacatggcaactatg-cag-----
upper sequence: GRMZM2G305254_T07 (Zea mays), 5'ss of exon 2
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 3
GTCATTGGTCCCTATCGATCTGGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtagttagatgttgcttctaatgttataaacatggattccctagtttgcttactaga-actatttgagaatg--tgataatcttggcag-tgcag---
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GTGATTGGCCCATATCGTTCTGGAAAATCATTTCTACTCAATCAGCTTCTTTCTCTTTCTTGTTATGAAGgt-----------gcttcttatctcatatactcgggctctgcggtttacttactttttgctactcaacattgacttccaatattttcaaattcatcag
upper sequence: GRMZM2G305254_T07 (Zea mays), 5'ss of exon 2
lower sequence: PP1S100_89V6.1 (Physcomitrella patens), 5'ss of exon 3
GTCATTGGTCCCTATCGATCTGGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtagttagatgtt-gcttctaatgttataaacatggat--tccctagtttgcttactagaactatttgagaatgtgataatcttggcagtgcag--------------------------------------------------------------------------------
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GTCATCGGACCTTATCGTTCTGGAAAATCATTTCTCCTCAATCAGCTTCTGTCACTTTCCTGCAATGAAGgtatttatttatttacttatagtttcatcttcatcagtaactccaagtcagaatgcttaaatgttttcaccttttattggatgtaaacatttagtcctaacttccacaaactacctgttagtcgtagaatcaaggctttgaagcatagtctcatcctcaatcacgtgtatgcag
upper sequence: GRMZM2G305254_T07 (Zea mays), 5'ss of exon 2
lower sequence: EFJ35720 (Selaginella moellendorffii), 5'ss of exon 3
GTCATTGGTCCCTATCGATCTGGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtagttagatgttgcttctaatgttataaacatggattccctagtttgcttactagaactatttgagaatgtgataatcttggcagtgcag
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GTCATAGGTCCCTATCGATCGGGAAAATCATTTCTTCTAAACCAGCTTCTATCTCTCACTTGCAATGAAGgtaagct-atgtcacttcgaaggtt-----ccttggtgccaaattgttttcattgtgaatacaag--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|160481497|gb|EY254329.1|EY254329EST: TGGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAG GTTTTGGAGTTGGTCATATGCGAGATACTAAAACTAAAG
genomic: TGGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtagttagat ... ggcagtgcagGTTTTGGAGTTGGTCATATGCGAGATACTAAAACTAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATTGGTCCCTATCGATCTGGAAAATCATTTCTCCTCAACCAGCTTCTCTCCTTATCTTGTGATAAAGgtagttagatgttgcttctaatgttataaacatggattccctagtttgcttactagaactatttgagaatgtgataatcttggcagtgcag
- - - - - - - - - - - - - - - - CTCCTC