Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATACTGCAACGACCTTCACTTGCAAGTGTCCCGTCAGGAGTGGTTAACTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAGgtacttttatccagctttaactttgttgtaggtattacccctttactgttcttatcaattagcatgttggcacttaagcgagttttatccacccaag

Basic information

species Zea mays
transcript GRMZM2G300651_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76925580|gb|DV170489.1|DV170489
EST:     CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAG                         GCACTTGGACTCTGCTAATTCCATTGAGGAGAAGGACAAGATCATTGAGAT
genomic: CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAGgtacttttat ... tccacccaagGCACTTGGACTCTGCTAATTCCATTGAGGAGAAGGACAAGATCATTGAGAT
EST: gi|71326679|gb|DR799997.1|DR799997
EST:     CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAG                         GCACTTGGACTCTGCTAATTCCATTGAGGAGAAGGACAAGATCATTGAGAT
genomic: CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAGgtacttttat ... tccacccaagGCACTTGGACTCTGCTAATTCCATTGAGGAGAAGGACAAGATCATTGAGAT
EST: gi|71447562|gb|DR828612.1|DR828612
EST:     CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAG                         GCACTTGGACTCTGCTAGTTCCATTGAGGAGAAGGACAAGATCATTGAGAT
genomic: CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAGgtacttttat ... tccacccaagGCACTTGGACTCTGCTAATTCCATTGAGGAGAAGGACAAGATCATTGAGAT
EST: gi|78113498|gb|DV531889.1|DV531889
EST:     CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAG                         GCACTTGGACTCTGCTAATTCCATTGAGGAGAAGGACAAGATCATTGAGAT
genomic: CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAGgtacttttat ... tccacccaagGCACTTGGACTCTGCTAATTCCATTGAGGAGAAGGACAAGATCATTGAGAT
EST: gi|78104008|gb|DV522426.1|DV522426
EST:     CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAG                         GCACTTGGACTCTGCTAATTCCATTGAGGAGAAGGACAAGATCATTGAGAT
genomic: CTTTTGCAATGGATTGTCTTGATAATGGCTTCTACACCATTGCCTCCAAGgtacttttat ... tccacccaagGCACTTGGACTCTGCTAATTCCATTGAGGAGAAGGACAAGATCATTGAGAT