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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacgagcgacgagatccaagctcgcctatagtgtgcgccttaggctttgtttcgtcatgatggatgtgtcagtgtgtactgtaccgatgcatca...

Basic information

species Zea mays
transcript GRMZM2G181151_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 2
-------------GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACA---TGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacgagcgacgagatcca---agctcgcctatagtgtgcgccttaggctttgtttcgtcatgatggatgtgtcagtgt---gtactgtaccgatgcatca
             |   |  | |||||||||||||||||| |||| || |    |||||||||| ||||| ||||||||||||||||||| |||||  |   ||||||    | |   || | | |||  |  | | || ||  |  |  || |     |    |  |   |    |||| | |||    
GTTGCTCTTGCTGGGCATCAAACATGGGTCTGGTGAAGGATGGCGCCGCCGATTTGGAGGAGGGGACCCTGGAGATCGGCATGGgtgagtaacgag--atcggatccattgcgttgtgcttttgcgtgatcagtggcctgtgagtt-ttgtgttttgcttccgggcttctggcggcgtactggtgcc---

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 2
------------------------GTTG--TTCAGCATGGGTC--TGGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacgagcga-cgagatccaagctcgcctatagtgtgcgccttaggctttgtttcgtcatgatgga-tgtgtc-agtgtgtactgtaccgatgcatca
                         |||  |||    || | |  ||||| ||    |  ||||||||||||| ||||| || |||||||| |||||| |||||| | ||| |         | || | | |  | | |   ||   || |    |||   | |||| | |||| ||| |  |   |||  ||  |  |
GGATTGTGGAGTGGTTTGGTTTGATTTGATTTCGATCTGTGACAATGGTGGAGACTAGTATCGACATGGAGGAAGGAACTCTCGAGATCGGAATGGgttagtcaccaccgatctttgcgttggatcacatctgttcttccgttt--tctctagaacgtttggttggaatttgtctagtttagaagttact-atagaaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211464055|gb|FL062026.1|FL062026
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|32919410|gb|CF024222.1|CF024222
EST:     GTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GTGAAGGAAGGCGTCGACATGGAGGAGGGAA-CCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211464049|gb|FL062020.1|FL062020
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211045587|gb|FL062119.1|FL062119
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211474170|gb|FL062078.1|FL062078
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211223693|gb|FL399500.1|FL399500
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211279000|gb|FL407011.1|FL407011
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211469118|gb|FL062056.1|FL062056
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211476688|gb|FL062089.1|FL062089
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211466586|gb|FL062037.1|FL062037
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211131888|gb|FL371457.1|FL371457
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211471640|gb|FL062065.1|FL062065
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|8367004|gb|BE049949.1|BE049949
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACACGACTGTATCTGGTGTGGCCGGGCCTCTGGCTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211332062|gb|FL381794.1|FL381794
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|32851420|gb|CD991101.1|CD991101
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211124910|gb|FL425297.1|FL425297
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGCAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|33100666|gb|CF060626.1|CF060626
EST:     GTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GTGAAGGAAGGCGTCGACATGGAGGAGGGAACCC-TAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211461534|gb|FL062016.1|FL062016
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211250194|gb|FL420138.1|FL420138
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGCAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTAT
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTAT
EST: gi|211045584|gb|FL062116.1|FL062116
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211132918|gb|FL391883.1|FL391883
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211029340|gb|FL373997.1|FL373997
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211461533|gb|FL062015.1|FL062015
EST:     GGTGAAGGAAGGCGTCNACTTGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTA-AGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211172669|gb|FL375066.1|FL375066
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211464053|gb|FL062024.1|FL062024
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211439866|gb|FL422480.1|FL422480
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211427007|gb|FL427232.1|FL427232
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211034220|gb|FL370384.1|FL370384
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211459002|gb|FL061993.1|FL061993
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211332674|gb|FL416300.1|FL416300
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211466587|gb|FL062038.1|FL062038
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211466594|gb|FL062045.1|FL062045
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|211448189|gb|FL410292.1|FL410292
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
EST: gi|24462502|gb|BM660033.1|BM660033
EST:     GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGG                         AGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG
genomic: GGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 506

GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 487

GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 196

GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 662

GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacg ... acctgtgcagAGTACAGGACTGTATCTGGTGTGGCCGGGCCTCTGGTTATCTTGGATAAAGTAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAACCCTAGAGATCGGCATGGgtgagtcacgagcgacgagatccaagctcgcctatagtgtgcgccttaggctttgtttcgtcatgatggatgtgtcagtgtgtactgtaccgatgcatca

- - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC