Sequence
atgc intronic sequence ATGC exonic sequenceATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgttccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 2
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgttccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaat-taacag
||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||| | | ||| | | || | | | | || | || || | || || || | |||| ||| || ||| | | ||| | ||| |||||||| || || | | | || ||| ||| ||||||
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTAAGGCAGATAAAGGCCCAGGAAGAAGAATTTGAAACTTTTAATCTAAAGATTGTGCATAGAAAAAACAGgtgctctttttctggtccttaattacttggcatttctttattagttcatttgtat--taaaatgatacttggt-----atcatgcttg-gtgtttgcgtttgttaatttgtt---------tatctctaac-gatattttttaactcc-attatatcctgctgacaatataacag
upper sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 4
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgttccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag
| ||||||||||||| ||||||||||||| |||||||| || |||||||| |||||||| ||||||||||| |||||||||||| || || || | || ||| | ||| | ||| |||| | | |||||| || |||| ||| | || | || | || | | | | |
---------------CTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGAAAAAACAGGCATGTTTTTAATGTgtatgt---gtgtgtatgcttatctaagctataatcactagtcatggtatttattggttaagtatacttctccaataagcatgcttactatttacc-tcaattt-------------------------------------------------------
upper sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 2
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgttccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag
|||| || ||||| || |||||||||| || | ||| ||||||| || ||||| || |||||||| |||||||| ||||||||||| || ||||||||| || | ||||| | | | || | | || | ||| | | | || |||| | | || | | || | || | | | ||
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgt--cttaaaca--tatcatgcttactattttcattcatttgcaaagtagt--tgaggaaattagtact--tcagatttttttttatgatatagattatagaag------------------------------------------------------------------
upper sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 2
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgt-tccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag
|||| || | ||| || ||||||||||||| ||||||||||||| |||||||| || |||||||| |||||||| |||||||| || |||||||||||| || || || | || |||| | | || | |||| || ||| | | |||||| || |||| ||| | || | || | ||
ATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAGGCACAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTTCACAGAAAAAACAGgcatgtttttaatgtgtttgtgtgtgtatgctgatct----aagctatattcactagtcatggtatttattggttaagtatacttctccaataaacatgcttac-----------------------------------------------------------------------
upper sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 2
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgttccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag
|||| || ||||| || |||||||||| || ||||| ||||||| |||||||| || |||||||| |||||||| ||||||||||| || ||||||||| || | ||||| | | | || | | || | | ||| || | || |||| || || | || | || | | | ||
ATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAGGCTCAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGgcatgt--cttaaaca--tatcatgcttactattttcattca--tttgcaaagttgttgaggaaatt----agtacttaagatttttttatgatatagattatagaagaa----------------------------------------------------------------
upper sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv01s0011g01590.t01 (Vitis vinifera), 5'ss of exon 8
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgttccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag
|||| |||||||| || ||||||||||||| ||||||||||| | |||||||| || ||||| || |||||||| || ||||||||||| ||||||||| || | | |||||| || | ||||| || ||| || || || || | ||| | | | | || | |||| || | |
ATGAAGAAGCAGCTGCTGTGCAAGAGCAAGTAAGGCAGATAAAAGCTCAGGAGGAGGAATTTGAGACCTTCAATCTCAAAATTGTGCATAGGAAAAACAGgcatgtc----------tcccctcatctgaaaaatcttttaaactattaaataact-catcctagttctttgcaggctaatattccatt----ttgaagttacagc-tgctatcat----------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32930222|gb|CF035034.1|CF035034EST: GAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAG AACTGGCTTTGAAGAAGACAAAAATTTCCATGTTGTTCTCAATTCTGTCAT
genomic: GAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctt ... taattaacagAACTGGCTTTGAAGAAGACAAAAATTTCCATGTTGTTCTCAATTCTGTCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAGGAAGCAGCAGCATTGCAAGAGCAAGTCAGGCAGATAAAGGTGCAGGAGGAAGAGTTTGAAACTTTCAATCTTAAGATTGTGCATAGAAAAAACAGgtattttctttaaatgattgttccatctgttaatcttgttaaagcataaaaaaatgatatggtaatttccagttatctattgtccttgtgtgcctgtgttcacagtgtggcacctacgccgtatttttaaaagatattttatatcttctaacaccgtctcctgttaattaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA