Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTCTTCAGAAGATATATCTGGACAGAATCAAGTTAAGGCTTCTGTACAACGAAAGATTCGGCAAAGTATCGCTGATGAGgttttgtcattacaaagaaatctacttggatttctattcattttccctttcaattacagaatcttctgcctagcttactaaaattaactccattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G180990_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g21180.2 (Oryza sativa), 5'ss of exon 2
GTTCTCTTCAGAAGATATATCTGGACAGAATCAAGTTAAGGCTTCTGTACAACGAAAGATTCGGCAAAGTATCGCTGATGAGgttttgtcattacaaagaaatctacttggatttctattcattttccctttcaattacagaatcttctgcctagct-tactaaaattaactccattgcag
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GTTCTCTTTTGAAGATATATCTGCGCAGAATCAAGTTAAGGCCTCTGTGCAGCGGAAGATTCGGCAAAGTATTGCTGATGAGgttctgtgacgacaac-aaatttgcatacgactctattc---ttacatttcagtt-------ctgctgtttagctatattgatattaactctattgcag
upper sequence: GRMZM2G180990_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G41130.1 (Glycine max), 5'ss of exon 1
------------------GTTCTCTTCAGAAGATATATCTGGACAGAATCAAGTTAAGGCTTCTGTACAACGAAAGATTCGGCAAAGTATCGCTGATGAGgttttgtcattacaaagaaatctacttggatttctat--tcattttccctttcaattacagaat------cttctgcctagcttactaaa-------attaactccattgcag
|| || |||||| |||||| |||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||||| | |||| | | | ||| ||| | || | |||| | | |||| || | | ||||| ||||| |||||||||| |||||
CATGTCAGTTTCTTCCAGATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcataattgggctttaccctttgatgtgaataacaactttcgttattgtttactgattggttttttgttgcctgtgacactaacctcacccattaactccactgcag
upper sequence: GRMZM2G180990_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA04G41130.2 (Glycine max), 5'ss of exon 2
GTTCTCTTCAGAAGATATATCTGGACAGAATCAAGTTAAGGCTTCTGTACAACGAAAGATTCGGCAAAGTATCGCTGATGAGgttttgtcattacaaagaaatctacttggatttctat--tcattttccctttcaattacagaat------cttctgcctagcttactaaa-------attaactccattgcag
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ATTTTCAGGTGAAGATGTATCTGCACAGAACCAAGTGAAGGCATCTGTTCAACGAAAAATACGGCAAAGTATTGCTGAAGAGgtgatatcataattgggctttaccctttgatgtgaataacaactttcgttattgtttactgattggttttttgttgcctgtgacactaacctcacccattaactccactgcag
upper sequence: GRMZM2G180990_T02 (Zea mays), 5'ss of exon 2
lower sequence: Vv14s0060g01920.t01 (Vitis vinifera), 5'ss of exon 2
GTTCTCTTCAGAAGATATATCTGGACAGAATCAAGTTAAGGCTTCTGTACAACGAAAGATTCGGCAAAGTATCGCTGATGAGgttttgtcattacaaagaaatc---------tact-------tggatttctattcattttccctttcaattacag---aatcttctgcctagcttactaaaattaactccattgcag-------------------
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GTTCTCATCTGAAGATGTATCCTCACAAAATCAAGTTAAGGCATCGGTGCAACGCAAAATTCGGCAAAGCATTGCAGATGAGgttttaactctttagaggcattcttgttttttattgtaccaatgaatgacgactgattcacttatttaaaaaaatgataattgtcttctaaaatgactttgtctatgtcttttatagcctttcattttaatggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60337104|gb|DN204077.1|DN204077EST: AAGTTAAGGCTTCTGTACAACGAAAGATTCGGCAAAGTATCGCTGATGAG TACCCCAGCCTTGAACCTTTGCTAGATGACTTGCTCCCAAAAAAGTCACCT
genomic: AAGTTAAGGCTTCTGTACAACGAAAGATTCGGCAAAGTATCGCTGATGAGgttttgtcat ... tccattgcagTACCCCAGCCTTGAACCTTTGCTAGATGACTTGCTCCCAAAAAAGTCACCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTCTTCAGAAGATATATCTGGACAGAATCAAGTTAAGGCTTCTGTACAACGAAAGATTCGGCAAAGTATCGCTGATGAGgttttgtcattacaaagaaatctacttggatttctattcattttccctttcaattacagaatcttctgcctagcttactaaaattaactccattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT