1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTCCATCATTGCTTGGCATGGTCCCTTATGCTGGAATTGATCTTACTGTTTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttctaccagtatatattggtacttccaccctattagttatatttctgtgttactaagttatgattttatgatgtag
species | Zea mays |
transcript | GRMZM2G180971_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTATGAAACACTGAAAGAAATGTCCAGGACATATGTCCTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAGEST: gi|71323059|gb|DR798203.1|DR798203
genomic: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
EST: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAGEST: gi|78544099|gb|DV621597.1|DV621597
genomic: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
EST: TTATGAAACACTGAAAGAAATGTCCAGGACATATGTCCTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAGEST: gi|149001456|gb|EE038757.2|EE038757
genomic: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
EST: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAGEST: gi|20336906|gb|BQ172536.1|BQ172536
genomic: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
EST: TTATGAAACACTGAAAGAAATGTCCAGGACATATGTCCTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAGEST: gi|88747876|gb|DY532017.1|DY532017
genomic: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
EST: GGACATATGCCCTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGGTGCGGAACAGTTTTTGGAGCGCTAGEST: gi|211451242|gb|FL460011.1|FL460011
genomic: GGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
EST: AAAGAAATGTCCAGGACATATGCCYTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAAGTCTCTGGAGCGCTAEST: gi|149107568|gb|EE189450.2|EE189450
genomic: AAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAAC-AGTCTCTGGAGCGCTA
EST: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTTTCTGGAGCGCTAGEST: gi|60394866|gb|DN227735.1|DN227735
genomic: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
EST: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAGEST: gi|88748965|gb|DY533106.1|DY533106
genomic: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
EST: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAG ATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
genomic: TTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttct ... tatgatgtagATCCTGGCCCTTTAGTACAGCTGGGCTGCGGAACAGTCTCTGGAGCGCTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCATCATTGCTTGGCATGGTCCCTTATGCTGGAATTGATCTTACTGTTTATGAAACACTGAAAGAAATGTCCAGGACATATGCCCTCGTGGACAAAGgtacatttctaccagtatatattggtacttccaccctattagttatatttctgtgttactaagttatgattttatgatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA