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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATTAGCCCTTTTATGTGTAAAATAACAACTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaatgaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta...

Basic information

species Zea mays
transcript GRMZM2G180820_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180820_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
TTTATTAGCCCTTTTATGTGTAAAATAACAACTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaat---gaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta-
                               || ||||||||||| |||||||| || ||||| |||||||||||||||||||||||  | ||||| |||||||| | || | |    |       || |   ||  ||   ||  ||    |||  ||    | |   ||    ||   | | |  |   || |    ||   
-------------------------------CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctctatcctttt----agattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt

upper sequence: GRMZM2G180820_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G05250.2 (Glycine max), 5'ss of exon 9
TTTATTAGCCCTTTTATGTGTAAAATAACAACTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaatgaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta------
                               |||||||| ||||| || ||||| |||||||| |||||||||||||| ||  |||| |  |||   |||||| ||| | ||||  |        |   ||  ||  || |||   ||     || ||      | |  |     ||||  || |     | |||   |       
-------------------------------CTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttcttttatg----gaaaataatcattgggtt-tgaca-aaaatcttttattgaagatttcaatgggggcatgtttgacaaaaatctttttttgaagat

upper sequence: GRMZM2G180820_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G23590.1 (Glycine max), 5'ss of exon 9
TTTATTAGCCCTTTTATGTGTAAAATAACAACTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctctgtattgtgatgcaatgaaattca-tgttgcctctagactatagcattgttcagcttcaccttgacta---
                               |||||||| ||||| || |||||||||||||| |||||||||||||| || ||||| |  |||   |||||| ||| | ||||  |        |   ||  ||  ||   |   |||    |  | | || |     |   |||      || |||||||||| || ||   
-------------------------------CTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttcttttatg----gaaaataatcattgagtttgaaaagaatctcttagaatatttcacagggggcatatttaaatttagcttcacctagattagcc