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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaactttgatgcgatggatttgtggatagggtgtggtggtgcagggattaccgtcatttaggattagtccctgt...

Basic information

species Zea mays
transcript GRMZM2G180724_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 5'ss of exon 2
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaactttgatgcgatggatttgtggatagggtgtggtggtgcagggatta--ccgtcatttaggattagtccctgt-----
|||||| |||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||  | || | | | |      || |     |    ||| | |||     ||| | || |  || |  | | |||   | ||| | ||| | | |   ||       
CGTGCGGTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACCCGCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtt-acctcccctcctccagatgttctcttgtgcccgcggttgat-----gatggtgt-taatgtttgaagtattgatctgtcctgtagaaatggaggcttactttt

upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 5'ss of exon 2
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaactttgatgcgatggatttgtggatagggt-gtggtggtgcagggattaccgtc--atttaggattagtccctgt
||||||||||||||||||| | ||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||| |   ||    |  | |        |     |   ||     |  |   | ||   || |   ||   ||    |||| |  || ||  ||| 
CGTGCGCTGCTGGGAGTACCGCCAGCAGCCGGCCATCGTCCGCCTCACCCGCCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtcg--cttcccttcttcttactagactgtccccctctctcgctcttactactgtgcccgcggatctgtatcaatcgacgatggatttcgccttggttgctg-

upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 5'ss of exon 2
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaactttgatgcgatggatttgtggatagggtgtggtggtgcagggattaccg--tcatttaggattagtccctgt--
 ||  | || ||||||||  | ||||||||  |||| || || ||     | ||||| || ||||||||||| || || |||||||||||||||||||||||   | |  ||   |   |   |       |  ||   || | |||   | ||  || || ||   || |  ||| ||  | |||   | |||  |  |||  
GGTTAGGTGTTGGGAGTATCGCCAGCAGCCTTCCATTGTTCGTCTTGTTCGTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttcttcttctcttcat-tttggttatcaatttaataggttta--ggtaatgt-tgttgaatcaagccttatcgattgattgctggttaagcggtgtct

upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 5'ss of exon 2
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaac--tttgatgcgatggatttgtggatagggtgtggtggtgcagggattaccgtcatttaggattagtccctgt
 ||| | |||||||||||  | ||||| ||  | || ||  ||  |||  | ||||| || ||||| ||||| |||||| | ||||||||||||||||||||     || |     |  |   ||    |  |||  |    |   |||     | |  | |||  |     |       || |  |    || ||   |||
GGTGAGGTGCTGGGAGTATCGCCAGCACCCTTCAATTGTGTGCGCCACGCGCCCCACTCGACCCGATAAGGCTCGCCGCTTGGGCTACAAGGCCAAGCAGgttatcattgtttttcttacatttgattgcgattttttattttattttttatatttgaatttgggcgattgtgttcggttgtga--tgatgttcgtttgtgt

upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: EDP06755 (Chlamydomonas reinhardtii), 5'ss of exon 2
---------CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaactttgatgcgatggatttgtggatagggtgtggtggtgcagggattaccgtcatttaggattagtccctgt
          |  ||| ||  ||  |||| |    ||| || |  |||   |  |     || |  ||||| || |||   |   || |  |   ||||||  |||  ||  ||  | |  |   |   |  |  | |||   |  | |||    ||   ||   |     ||   |     ||   ||  |  ||             
CCCGGACAAGGCCCGCCGCCTGGGCTACAAGGCCAAGCAGGGCTACGTTGTCTACCGCGTGCGCGTCCGCCGCGGCAACCGCAAGCGGCCTGTGCACAAGgtaaagtcggcggaattgcagctcctcttgattttccactccca--caatgctcctgctaat---gctaaatgtcactttttttcttgttttgcag-------------

upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S28_15V6.1 (Physcomitrella patens), 5'ss of exon 2
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaactttgatgcgatggat-ttgtggatagggtgtggtggtgcagggattaccgtcatttaggattagtccctgt
 |||||||||||||||||||||||||  || | ||| |||||| ||||  ||||  | || || |||||||| ||  | || || |||||||| ||||| ||   | |  |   |  |     | |    |  | |    |||||  | |   | |  ||| || ||    | | |   ||    | |   || ||     
TGTGCGCTGCTGGGAGTACAGGCAGCTTCCCGGCATTGTCCGCGTCACTCGGCCTTCTCGGCCTGACAAGGCTCGTAGACTAGGTTACAAGGCTAAGCAAgtgcgtgtcattaaaccgattacttcttgttacgttcatgtggatactttatgtcgtttgttgtagttgcagtactgttgt-gcctggaggtactcgtcag

upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 5'ss of exon 2
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttct--cccattggcgcgtgccaactttgatgcgatggatttgtggatagggtgtggtggtgcagggattaccgtcatttaggattagtccctgt-
 ||||| |||||||||||||||||||  || |  ||||||||| ||||  | ||  | || || |||||||||||||| || || |||||||||||||||||   |        ||||  |    ||        |||  |  | | |||| | |    |    |    ||||   ||     ||||   |  |||    |  
TGTGCGATGCTGGGAGTACAGGCAGCTCCCAGGAATCGTCCGCGTCACTCGCCCTTCTCGTCCTGACAAGGCCCGCCGTCTGGGTTACAAGGCCAAGCAGgtgctttcatggatccatatgtaactgttgtaccagatttgtggaacttgtaggtt--cttccatttcacaggagatatttaaattttaaaa-agttggaggg

upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S152_141V6.1 (Physcomitrella patens), 5'ss of exon 2
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaactttgatgcgatgg-atttgtggatagggtgtggtgg--tgcagggattaccgtcatttaggattagtccctgt
 |||||||||||||||||||||||||  || | ||| |||||  ||||  | || | ||| ||||||||||| |||||||| || || ||||||||||||||     | |  |   ||   | | | |  |||  |   | |  ||    | ||  | | | || |  |||  ||| || | |  ||     ||||    || 
TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATTGTCCGTGTCACTCGCCCTAGCCGTCCCGACAAGGCTCGCCGCCTAGGGTATAAGGCCAAGCAGgtcagcttgcatc---tgaatctttcgagttttcgtcgaaagccatgaaagaatctgttcttgtaggctgcgtggagtagcttgtttcgaagttaggatttga

upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S134_151V6.1 (Physcomitrella patens), 5'ss of exon 2
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctc------ccattggcgcgtgccaactttgatgcgatggatt-tgtggatagggtgtggtggtgcagggattaccgtcatttaggattagtccctgt
 || |||||||||||||||||||||| ||| | ||| |||||| ||||  | || | |||||| |||||||| ||||| || || |||||||||||||||||   | |          || ||||     |     ||   ||  || | || ||||  |      |  |  | || |||   | ||| ||    |||||       
TGTTCGCTGCTGGGAGTACAGGCAGCTGCCCGGCATTGTCCGCGTCACCCGCCCTAGCCGCCCTGACAAGGCTCGCCGTCTTGGTTACAAGGCCAAGCAGgtcagtttggattagagacccttggtttcagtgtttttgtctgtaattgtttctgtgtgtctacatttatc-tacatggaacgctgtc-ttggacattaggg-----

upper sequence: GRMZM2G180724_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S34_445V6.1 (Physcomitrella patens), 5'ss of exon 2
CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttctcccattggcgcgtgccaactttgatgcgatggatttgtggatagggtgtggtggtgcagggattaccgtcatttaggattagtccctgt
 |||||||||||||||||||||||||  || | |||||||||| ||||  | ||  | || || |||||||| ||||| || || ||||||||||||||||||  | ||    | |      |       | |    |  |     | |||| |   ||| |   |  |    ||    |    | |  | |      ||
TGTGCGCTGCTGGGAGTACAGGCAGCTCCCCGGCATCGTCCGCGTCACTCGCCCTTCTCGGCCTGACAAGGCTCGCCGTCTAGGTTACAAGGCCAAGCAGgtacgtgttgagacttcaatttggctattttcttgcaccctttgcatttggaaaaattgtagcatttgaattgttttgatggcgtggcgtgaagtggcgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211150188|gb|FL390463.1|FL390463
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|71439673|gb|DR820723.1|DR820723
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|211308638|gb|FL245985.1|FL245985
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|71312859|gb|DR792956.1|DR792956
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|149083919|gb|EE173295.2|EE173295
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|14191289|gb|BG833519.1|BG833519
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|15208977|gb|BI430861.1|BI430861
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|31361321|gb|CD445678.1|CD445678
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|21760047|gb|BQ635588.1|BQ635588
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGTCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|71312849|gb|DR792955.1|DR792955
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|22818973|gb|BU499063.1|BU499063
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|15100604|gb|BI396395.1|BI396395
EST:     CAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: CAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|71311474|gb|DR792086.1|DR792086
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|71774755|gb|DR972633.1|DR972633
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|211482748|gb|FL422874.1|FL422874
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|148970789|gb|EE021541.2|EE021541
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|78118822|gb|DV537206.1|DV537206
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCGGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|148990631|gb|EE032022.2|EE032022
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|76281248|gb|DV020816.1|DV020816
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|22715565|gb|BU197836.1|BU197836
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|148949918|gb|EC895421.2|EC895421
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|76015121|gb|DT942291.1|DT942291
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|74246317|gb|DT654231.1|DT654231
EST:     ACAAGGCCCGCCGCTTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: ACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|211124648|gb|FL376733.1|FL376733
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|78089949|gb|DV518323.1|DV518323
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|21432397|gb|BQ547887.1|BQ547887
EST:     AGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: AGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|71426970|gb|DR808020.1|DR808020
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|148970788|gb|EE021540.2|EE021540
EST:     AAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: AAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|78027684|gb|DV496071.1|DV496071
EST:     GCCCACCCGCCCGGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|20301204|gb|BQ164147.1|BQ164147
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|110954943|gb|EE174995.1|EE174995
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|76015117|gb|DT942287.1|DT942287
EST:     CAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: CAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|211521230|gb|FL397614.1|FL397614
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|87156514|gb|DY401303.1|DY401303
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|211336188|gb|FL370173.1|FL370173
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCC
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCG-TGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCC
EST: gi|31362092|gb|CD446449.1|CD446449
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|78118821|gb|DV537205.1|DV537205
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTGGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|149085487|gb|EE174996.2|EE174996
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|28873661|gb|CB329619.1|CB329619
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|21432144|gb|BQ547634.1|BQ547634
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTTCTAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|5005764|gb|AI711826.1|AI711826
EST:     GGCT-CAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|76922744|gb|DV169152.1|DV169152
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|76281247|gb|DV020815.1|DV020815
EST:     CCGCCGCTTC-GCTAACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: CCGCCGCCTCGGCT-ACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
EST: gi|78089948|gb|DV518322.1|DV518322
EST:     GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAG                         GGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT
genomic: GGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 46

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC


Block sizes: 31 (upstream exon), 49 (downstream exon)
Score: 13

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC


Block sizes: 13 (upstream exon), 49 (downstream exon)
Score: 12

CGTGCGCTGCTGGGAGTACAGGCAGCAGCCGGCCATCGTCCGCCTCACAAGGCCCACCCGCCCCGACAAGGCCCGCCGCCTCGGCTACAAGGCCAAGCAGgtagatcttc ... ttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC