1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTGGGTTTGAGATGATTGATGCTATTGCGGAAGCTGAGGGCATATCAGTCAGCAGTAAGCAATTTAAGGCAATTGTCGGAAAAGgtaattaattttactgatacagggtgtatcactgagtgataaacttcgacctagctaagcattttgtgttcccctcatggtgatcaacttgaaagttgag...
species | Zea mays |
transcript | GRMZM2G179793_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAGGGCATATCAGTCAGCAGTAAGCAATTTAAGGCAATTGTCGGAAAAG GCCTCATTGGTGATGTCCCTGTAATGCTTGCCAAGCCACAGACTTTTATGAEST: gi|211037602|gb|FL306240.1|FL306240
genomic: TGAGGGCATATCAGTCAGCAGTAAGCAATTTAAGGCAATTGTCGGAAAAGgtaattaatt ... tctaatttagGCCTCATTGGTGATGTCCCTGTAATGCTTGCCAAGCCACAGACTTTTATGA
EST: TGAGGGCATATCATTCAGCAGTAAGCAATTTAAGGCAGTTGTCGGAAAAG GCCTCATTGGTGATGTCCCTGTAATGCTTGCCAAGCCACAGACTTTTATGAEST: gi|18661101|gb|BM501210.1|BM501210
genomic: TGAGGGCATATCAGTCAGCAGTAAGCAATTTAAGGCAATTGTCGGAAAAGgtaattaatt ... tctaatttagGCCTCATTGGTGATGTCCCTGTAATGCTTGCCAAGCCACAGACTTTTATGA
EST: ATTTAAGGCAATTGTCGGAAAAG GCCTCATTGGTGATGTCCCTGTAATGCTTGCCAAGCCACAGACTTTTATGAEST: gi|211115067|gb|FL244800.1|FL244800
genomic: ATTTAAGGCAATTGTCGGAAAAGgtaattaatt ... tctaatttagGCCTCATTGGTGATGTCCCTGTAATGCTTGCCAAGCCACAGACTTTTATGA
EST: TGAGGGCATATCATTCAGCAGTAAGCAATTTAAGGCAGTTGTCGGAAAAG GCCTCATTGGTGATGTCCCTGTAATGCTTGCCCAAGC-ACAGACTTTTATG
genomic: TGAGGGCATATCAGTCAGCAGTAAGCAATTTAAGGCAATTGTCGGAAAAGgtaattaatt ... tctaatttagGCCTCATTGGTGATGTCCCTGTAATGCTTGCC-AAGCCACAGACTTTTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGGTTTGAGATGATTGATGCTATTGCGGAAGCTGAGGGCATATCAGTCAGCAGTAAGCAATTTAAGGCAATTGTCGGAAAAGgtaattaattttactgatacagggtgtatcactgagtgataaacttcgacctagctaagcattttgtgttcccctcatggtgatcaacttgaaagttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA